Johanna Sandgren

Publications
Public outreach and news

Articles

Article: JCO PRECISION ONCOLOGY. 2023;7:e2300039

Diagnostic Yield From a Nationwide Implementation of Precision Medicine for all Children With Cancer.

Wadensten E; Wessman S; Abel F; Diaz De Ståhl T; Tesi B; Orsmark Pietras C; Arvidsson L; Taylan F; Fransson S; Vogt H; Poluha A; Pradhananga S; Hellberg M; Lagerstedt-Robinson K; Raj Somarajan P; Samuelsson S; Orrsjö S; Maqbool K; Henning K; Strid T; Ek T; Fagman H; Olsson Bontell T; Martinsson T; Puls F; Kogner P; Wirta V; Pronk CJ; Wille J; Rosenquist R; Nistér M; Mertens F; Sabel M; Norén-Nyström U; Grillner P; Nordgren A; Ljungman G; Sandgren J; Gisselsson D; Genomic Medicine Sweden Childhood Cancer Working G
Article: JOURNAL OF TRANSLATIONAL MEDICINE. 2023;21(1):342

The Swedish childhood tumor biobank: systematic collection and molecular characterization of all pediatric CNS and other solid tumors in Sweden.

Díaz de Ståhl T; Shamikh A; Mayrhofer M; Juhos S; Basmaci E; Prochazka G; Garcia M; Somarajan PR; Zielinska-Chomej K; Illies C; Øra I; Siesjö P; Sandström P-E; Stenman J; Sabel M; Gustavsson B; Kogner P; Pfeifer S; Ljungman G; Sandgren J; Nistér M
Article: CANCERS. 2023;15(7):1972

Simultaneous Ultra-Sensitive Detection of Structural and Single Nucleotide Variants Using Multiplex Droplet Digital PCR in Liquid Biopsies from Children with Medulloblastoma.

Arthur C; Jylhä C; de Ståhl TD; Shamikh A; Sandgren J; Rosenquist R; Nordenskjöld M; Harila A; Barbany G; Sandvik U; Tham E
Article: GENES CHROMOSOMES & CANCER. 2022;61(1):5-9

Amplification of ERBB2 (HER2) in embryonal rhabdomyosarcoma: A potential treatment target in rare cases?

Mitra S; Sydow S; Magnusson L; Piccinelli P; Törnudd L; Øra I; Ljungman G; Sandgren J; Gisselsson D; Mertens F
Journal article: F1000RESEARCH. 2020;9:63

Sarek: A portable workflow for whole-genome sequencing analysis of germline and somatic variants

Garcia M; Juhos S; Larsson M; Olason PI; Martin M; Eisfeldt J; DiLorenzo S; Sandgren J; De Ståhl TD; Ewels P; Wirta V; Nistér M; Käller M; Nystedt B
Article: F1000RESEARCH. 2020;9:63

Sarek: A portable workflow for whole-genome sequencing analysis of germline and somatic variants.

Garcia M; Juhos S; Larsson M; Olason PI; Martin M; Eisfeldt J; DiLorenzo S; Sandgren J; Díaz De Ståhl T; Ewels P; Wirta V; Nistér M; Käller M; Nystedt B
Article: SPRINGERPLUS. 2016;5(1):1861

Identification of mutations, gene expression changes and fusion transcripts by whole transcriptome RNAseq in docetaxel resistant prostate cancer cells.

Ma Y; Miao Y; Peng Z; Sandgren J; De Ståhl TD; Huss M; Lennartsson L; Liu Y; Nistér M; Nilsson S; Li C
Article: BIOMED RESEARCH INTERNATIONAL. 2015;2015:862039-12

Whole Exome- and mRNA-Sequencing of an AT/RT Case Reveals Few Somatic Mutations and Several Deregulated Signalling Pathways in the Context of SMARCB1 Deficiency.

Sandgren J; Holm S; Marino AM; Asmundsson J; Grillner P; Nistér M; Díaz de Ståhl T
Article: NATURE GENETICS. 2014;46(6):624-628

Mosaic loss of chromosome Y in peripheral blood is associated with shorter survival and higher risk of cancer.

Forsberg LA; Rasi C; Malmqvist N; Davies H; Pasupulati S; Pakalapati G; Sandgren J; Diaz de Ståhl T; Zaghlool A; Giedraitis V; Lannfelt L; Score J; Cross NCP; Absher D; Janson ET; Lindgren CM; Morris AP; Ingelsson E; Lind L; Dumanski JP
Article: BMC CANCER. 2013;13:231

Age dependence of tumor genetics in unfavorable neuroblastoma: arrayCGH profiles of 34 consecutive cases, using a Swedish 25-year neuroblastoma cohort for validation.

Cetinkaya C; Martinsson T; Sandgren J; Träger C; Kogner P; Dumanski J; Díaz de Ståhl T; Hedborg F
Article: JOURNAL OF NEURO-ONCOLOGY. 2012;107(1):37-49

Novel amplifications in pediatric medulloblastoma identified by genome-wide copy number profiling.

Nord H; Pfeifer S; Nilsson P; Sandgren J; Popova S; Strömberg B; Alafuzoff I; Nistér M; Díaz de Ståhl T
Article: ENDOCRINE-RELATED CANCER. 2010;17(3):561-579

Recurrent genomic alterations in benign and malignant pheochromocytomas and paragangliomas revealed by whole-genome array comparative genomic hybridization analysis.

Sandgren J; Diaz de Ståhl T; Andersson R; Menzel U; Piotrowski A; Nord H; Bäckdahl M; Kiss NB; Brauckhoff M; Komorowski J; Dralle H; Hessman O; Larsson C; Akerström G; Bruder C; Dumanski JP; Westin G
Article: ENDOCRINE-RELATED CANCER. 2010;17(3):835-846

MicroRNA profiling of benign and malignant pheochromocytomas identifies novel diagnostic and therapeutic targets.

Meyer-Rochow GY; Jackson NE; Conaglen JV; Whittle DE; Kunnimalaiyaan M; Chen H; Westin G; Sandgren J; Stålberg P; Khanafshar E; Shibru D; Duh Q-Y; Clark OH; Kebebew E; Gill AJ; Clifton-Bligh R; Robinson BG; Benn DE; Sidhu SB
Article: EXPERIMENTAL AND MOLECULAR MEDICINE. 2010;42(7):484-502

Integrative epigenomic and genomic analysis of malignant pheochromocytoma.

Sandgren J; Andersson R; Rada-Iglesias A; Enroth S; Akerstrom G; Dumanski JP; Komorowski J; Westin G; Wadelius C
Article: EUROPEAN JOURNAL OF HUMAN GENETICS. 2010;18(5):560-568

Frequent genetic differences between matched primary and metastatic breast cancer provide an approach to identification of biomarkers for disease progression.

Popławski AB; Jankowski M; Erickson SW; Díaz de Ståhl T; Partridge EC; Crasto C; Guo J; Gibson J; Menzel U; Bruder CE; Kaczmarczyk A; Benetkiewicz M; Andersson R; Sandgren J; Zegarska B; Bała D; Srutek E; Allison DB; Piotrowski A; Zegarski W; Dumanski JP
Article: INTERNATIONAL JOURNAL OF CANCER. 2010;126(6):1390-1402

Focal amplifications are associated with high grade and recurrences in stage Ta bladder carcinoma.

Nord H; Segersten U; Sandgren J; Wester K; Busch C; Menzel U; Komorowski J; Dumanski JP; Malmström P-U; Díaz de Ståhl T
Article: NEURO-ONCOLOGY. 2009;11(6):803-818

Characterization of novel and complex genomic aberrations in glioblastoma using a 32K BAC array.

Nord H; Hartmann C; Andersson R; Menzel U; Pfeifer S; Piotrowski A; Bogdan A; Kloc W; Sandgren J; Olofsson T; Hesselager G; Blomquist E; Komorowski J; von Deimling A; Bruder CEG; Dumanski JP; Díaz de Ståhl T
Article: HUMAN MUTATION. 2008;29(9):1118-1124

Somatic mosaicism for copy number variation in differentiated human tissues.

Piotrowski A; Bruder CEG; Andersson R; Diaz de Ståhl T; Menzel U; Sandgren J; Poplawski A; von Tell D; Crasto C; Bogdan A; Bartoszewski R; Bebok Z; Krzyzanowski M; Jankowski Z; Partridge EC; Komorowski J; Dumanski JP
Article: BIOINFORMATICS. 2008;24(6):751-758

A segmental maximum a posteriori approach to genome-wide copy number profiling.

Andersson R; Bruder CEG; Piotrowski A; Menzel U; Nord H; Sandgren J; Hvidsten TR; Diaz de Ståhl T; Dumanski JP; Komorowski J
Article: AMERICAN JOURNAL OF HUMAN GENETICS. 2008;82(3):763-771

Phenotypically concordant and discordant monozygotic twins display different DNA copy-number-variation profiles.

Bruder CEG; Piotrowski A; Gijsbers AACJ; Andersson R; Erickson S; Diaz de Ståhl T; Menzel U; Sandgren J; von Tell D; Poplawski A; Crowley M; Crasto C; Partridge EC; Tiwari H; Allison DB; Komorowski J; van Ommen G-JB; Boomsma DI; Pedersen NL; den Dunnen JT; Wirdefeldt K; Dumanski JP
Article: HUMAN MUTATION. 2008;29(3):398-408

Profiling of copy number variations (CNVs) in healthy individuals from three ethnic groups using a human genome 32 K BAC-clone-based array.

Díaz de Ståhl T; Sandgren J; Piotrowski A; Nord H; Andersson R; Menzel U; Bogdan A; Thuresson A-C; Poplawski A; von Tell D; Hansson CM; Elshafie AI; Elghazali G; Imreh S; Nordenskjöld M; Upadhyaya M; Komorowski J; Bruder CEG; Dumanski JP
Article: CELL CALCIUM. 2006;39(6):529-537

Arachidonic acid is a physiological activator of the ryanodine receptor in pancreatic beta-cells.

Woolcott OO; Gustafsson AJ; Dzabic M; Pierro C; Tedeschi P; Sandgren J; Bari MR; Nguyen KH; Bianchi M; Rakonjac M; Rådmark O; Ostenson C-G; Islam MS
Article: MOLECULAR AND CELLULAR ENDOCRINOLOGY. 2005;240(1-2):50-57

Cytokines affect PDX-1 expression, insulin and proinsulin secretion from iNOS deficient murine islets.

Andersson AK; Börjesson A; Sandgren J; Sandler S
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All other publications

Preprint: 2023;Research Square

The Swedish Childhood Tumor Biobank: Systematic collection and molecular characterization of all pediatric CNS and other solid tumors in Sweden

de Ståhl TD; Shamikh A; Mayrhofer M; Juhos S; Basmaci E; Prochazka G; Garcia M; Somarajan PR; Illies C; Øra I; Siesjö P; Sandström P-E; Stenman J; Sabel M; Gustavsson B; Kogner P; Pfeifer S; Zielinska-Chomej K; Ljungman G; Sandgren J; Nistér M
Corrigendum: SPRINGERPLUS. 2016;5(1):2084

Erratum to: Identification of mutations, gene expression changes and fusion transcripts by whole transcriptome RNAseq in docetaxel resistant prostate cancer cells.

Ma Y; Miao Y; Peng Z; Sandgren J; De Ståhl TD; Huss M; Lennartsson L; Liu Y; Nistér M; Nilsson S; Li C

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