Omid Faridani

About me
Publications
CV
Public outreach and news

About me

I am a molecular biologist by training. I love doing science and specifically the moment that you say "Finally, got it" ! Apart from science, I love photography very much.

Research

I like investigating single cell transcriptomics, including small non-coding RNAs. I have developed some methodology to profile and characterize mRNAs and small RNAs in single cells (Smart-seq2 & Small-seq)

Articles

Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2021;118(17):e2011574118

Small noncoding RNA profiling across cellular and biofluid compartments and their implications for multiple sclerosis immunopathology.

Zheleznyakova GY; Piket E; Needhamsen M; Hagemann-Jensen M; Ekman D; Han Y; James T; Khademi M; Al Nimer F; Scicluna P; Huang J; Kockum I; Faridani OR; Olsson T; Piehl F; Jagodic M
Article: NATURE BIOTECHNOLOGY. 2020;38(6):708-714

Single-cell RNA counting at allele and isoform resolution using Smart-seq3.

Hagemann-Jensen M; Ziegenhain C; Chen P; Ramsköld D; Hendriks G-J; Larsson AJM; Faridani OR; Sandberg R
Article: NATURE. 2019;565(7738):251-254

Genomic encoding of transcriptional burst kinetics.

Larsson AJM; Johnsson P; Hagemann-Jensen M; Hartmanis L; Faridani OR; Reinius B; Segerstolpe Å; Rivera CM; Ren B; Sandberg R
Article: NATURE PROTOCOLS. 2018;13(10):2407-2424

Small-seq for single-cell small-RNA sequencing.

Hagemann-Jensen M; Abdullayev I; Sandberg R; Faridani OR
Article: NATURE BIOTECHNOLOGY. 2016;34(12):1264-1266

Single-cell sequencing of the small-RNA transcriptome.

Faridani OR; Abdullayev I; Hagemann-Jensen M; Schell JP; Lanner F; Sandberg R
Article: STEM CELLS TRANSLATIONAL MEDICINE. 2015;4(10):1199-1213

In Vivo Effects of Mesenchymal Stromal Cells in Two Patients With Severe Acute Respiratory Distress Syndrome.

Simonson OE; Mougiakakos D; Heldring N; Bassi G; Johansson HJ; Dalén M; Jitschin R; Rodin S; Corbascio M; El Andaloussi S; Wiklander OPB; Nordin JZ; Skog J; Romain C; Koestler T; Hellgren-Johansson L; Schiller P; Joachimsson P-O; Hägglund H; Mattsson M; Lehtiö J; Faridani OR; Sandberg R; Korsgren O; Krampera M; Weiss DJ; Grinnemo K-H; Le Blanc K
Article: FEBS JOURNAL. 2014;281(21):4935-4950

Epstein-Barr virus encoded microRNAs target SUMO-regulated cellular functions.

Callegari S; Gastaldello S; Faridani OR; Masucci MG
Article: NATURE PROTOCOLS. 2014;9(1):171-181

Full-length RNA-seq from single cells using Smart-seq2.

Picelli S; Faridani OR; Björklund AK; Winberg G; Sagasser S; Sandberg R
Article: NATURE METHODS. 2013;10(11):1096-1098

Smart-seq2 for sensitive full-length transcriptome profiling in single cells.

Picelli S; Björklund ÅK; Faridani OR; Sagasser S; Winberg G; Sandberg R
Article: NATURE BIOTECHNOLOGY. 2012;30(8):777-782

Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells.

Ramsköld D; Luo S; Wang Y-C; Li R; Deng Q; Faridani OR; Daniels GA; Khrebtukova I; Loring JF; Laurent LC; Schroth GP; Sandberg R
Article: NUCLEIC ACIDS RESEARCH. 2011;39(12):e80

Analysis of microRNA signatures using size-coded ligation-mediated PCR.

Arefian E; Kiani J; Soleimani M; Shariati SAM; Aghaee-Bakhtiari SH; Atashi A; Gheisari Y; Ahmadbeigi N; Banaei-Moghaddam AM; Naderi M; Namvarasl N; Good L; Faridani OR
Article: NATURE CELL BIOLOGY. 2010;12(4):351-361

A deneddylase encoded by Epstein-Barr virus promotes viral DNA replication by regulating the activity of cullin-RING ligases.

Gastaldello S; Hildebrand S; Faridani O; Callegari S; Palmkvist M; Di Guglielmo C; Masucci MG
Article: NUCLEIC ACIDS RESEARCH. 2008;36(16):e99

Specific ligation to double-stranded RNA for analysis of cellular RNA::RNA interactions.

Faridani OR; McInerney GM; Gradin K; Good L
Article: MOLECULAR THERAPY. 2007;15(8):1537-1542

Antisense PNA accumulates in Escherichia coli and mediates a long post-antibiotic effect.

Nikravesh A; Dryselius R; Faridani OR; Goh S; Sadeghizadeh M; Behmanesh M; Ganyu A; Klok EJ; Zain R; Good L
Article: NUCLEIC ACIDS RESEARCH. 2006;34(20):5915-5922

Competitive inhibition of natural antisense Sok-RNA interactions activates Hok-mediated cell killing in Escherichia coli.

Faridani OR; Nikravesh A; Pandey DP; Gerdes K; Good L

All other publications

Corrigendum: NATURE BIOTECHNOLOGY. 2020;38(3):374

Author Correction: Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells.

Ramsköld D; Luo S; Wang Y-C; Li R; Deng Q; Faridani OR; Daniels GA; Khrebtukova I; Loring JF; Laurent LC; Schroth GP; Sandberg R
Corrigendum: STEM CELLS TRANSLATIONAL MEDICINE. 2016;5(6):845

In Vivo Effects of Mesenchymal Stromal Cells in Two Patients With Severe Acute Respiratory Distress Syndrome.

Simonson OE; Mougiakakos D; Heldring N; Bassi G; Johansson HJ; Dalén M; Jitschin R; Rodin S; Corbascio M; El Andaloussi S; Wiklander OPB; Nordin JZ; Skog J; Romain C; Koestler T; Hellgren-Johansson L; Schiller P; Joachimsson P-O; Hägglund H; Mattsson M; Lehtiö J; Faridani OR; Sandberg R; Korsgren O; Krampera M; Weiss DJ; Grinnemo K-H; Le Blanc K
Editorial comment: NATURE BIOTECHNOLOGY. 2015;33(5):490-491

Putting cells in their place.

Faridani OR; Sandberg R

Employments

Affiliated to Research, Department of Women's and Children's Health, Karolinska Institutet, 2022-2025

Degrees and Education

Doctor Of Philosophy, Department of Cell and Molecular Biology, Karolinska Institutet, 2007

About me

Research

Articles

All other publications

Employments

Degrees and Education

News from KI

Events from KI