About me

I’m a postdoc researcher in machine learning filed, application of advanced statistical methods, Bayesian inference, Longitudinal and time to event and machine learning algorithms in biology, health and medicine. I’m, also, interested in the statistical genetics modeling and analysis OMICs and longitudinal data from national registry and surveys.

Research description

Advanced Clustering, Regression and Classification Algorithms

Statistical Learning for OMICs data analysis

Longitudinal Statistical Models for high-dimensional data

Survival and Risk Modelling

Bayesian and Network Meta-analysis

Model-based linkage and association analysis in genetic epidemiology

Publications:

Khodabakhshi Z, Amini M, Mostafaei S, Haddadi Avval A, Nazari M, Oveisi M, Shiri I, Zaidi H. Overall survival prediction in renal cell carcinoma patients using computed tomography radiomic and clinical information. Journal of digital imaging. 2021 Oct;34(5):1086-98.

Khodabakhshi Z, Mostafaei S, Arabi H, Oveisi M, Shiri I, Zaidi H. Non-small cell lung carcinoma histopathological subtype phenotyping using high-dimensional multinomial multiclass CT radiomics signature. Computers in biology and medicine. 2021 Sep 1;136:104752.

Riahi P, Kazemnejad A, Mostafaei S, Meguro A, Mizuki N, Ashraf-Ganjouei A, Javinani A, Faezi ST, Shahram F, Mahmoudi M. ERAP1 polymorphisms interactions and their association with Behçet’s disease susceptibly: Application of Model-Based Multifactor Dimension Reduction Algorithm (MB-MDR). PloS one. 2020 Feb 5;15(2):e0227997.

Mostafaei S, Abdollahi H, Dehkordi SK, Shiri I, Razzaghdoust A, Moghaddam SH, Saadipoor A, Koosha F, Cheraghi S, Mahdavi SR. CT imaging markers to improve radiation toxicity prediction in prostate cancer radiotherapy by stacking regression algorithm. La radiologia medica. 2020 Jan;125(1):87-97.

Mostafaei S, Kazemnejad A, Jamalkandi SA, Amirhashchi S, Donnelly SC, Armstrong ME, Doroudian M. Identification of novel genes in human airway epithelial cells associated with chronic obstructive pulmonary disease (COPD) using machine-based learning algorithms. Scientific reports. 2018 Oct 25;8(1):1-20.

Edalatifard M, Akhtari M, Salehi M, Naderi Z, Jamshidi A, Mostafaei S, Najafizadeh SR, Farhadi E, Jalili N, Esfahani M, Rahimi B. Intravenous methylprednisolone pulse as a treatment for hospitalised severe COVID-19 patients: results from a randomised controlled clinical trial. European Respiratory Journal. 2020 Dec 1;56(6).

Isaac Shiri, Yazdan Salimi, Masoumeh Pakbin, Ghasem Hajianfar, Atlas Haddadi Avval, Amirhossein Sanaat, Shayan Mostafaei, Azadeh Akhavanallaf, Abdollah Saberi, Zahra Mansouri, Dariush Askari, Mohammadreza Ghasemian, Ehsan Sharifipour, Saleh Sandoughdaran, Ahmad Sohrabi, Elham Sadati, Somayeh Livani, Pooya Iranpour, Shahriar Kolahi, Maziar Khateri, Salar Bijari, Mohammad Reza Atashzar, Sajad P. Shayesteh, Bardia Khosravi, Mohammad Reza Babaei, Elnaz Jenabi, Mohammad Hasanian, Alireza Shahhamzeh, Seyed Yaser Foroghi Gholami, Abolfazl Mozafari, Arash Teimouri, Fatemeh Movaseghi, Azin Ahmari, Neda Goharpey, Rama Bozorgmehr, Hesamaddin ShirzadAski, Rozbeh Mortazavi, Jalal Karimi, Nazanin Mortazavi, Sima Besharat, Mandana Afsharpad, Hamid Abdollahi, Parham Geramifar, Amir Reza Radmard, Hossein Arabi, Kiara RezaeiKalantari, Mehrdad Oveisi, Arman Rahmim, Habib Zaidi. COVID-19 Prognostic Modeling Using CT Radiomic Features and Machine Learning Algorithms: Analysis of a Multi-Institutional Dataset of 14,339 Patients. European Respiratory Journal. 2022

Hadifar S, Mostafaei S, Behrouzi A, Fateh A, Riahi P, Siadat SD, Vaziri F. Strain-specific behavior of Mycobacterium tuberculosis in A549 lung cancer cell line. BMC bioinformatics. 2021 Dec;22(1):1-2.

 

Education

Ph.D. in Biostatistics-Department of Biostatistics, Faculty of Medical Sciences, Tarbiat Modares University (TMU), Tehran, Iran, 2018.

Academic honours, awards and prizes

Yong Researcher in Bioinformatics Festival TMU-Tehran, 2018.

Member of Iran's National Genius Foundation. 

Also, I have finish 3 national projects as a Principal Investigator at National Institute for Medical Research Development (NIMAD), Iran (Grant number: #958812: Title: A Machine Learning and Penalized Generalized Linear Modeling for High-Dimensional Data in Genome-Wide Association Study; #965425: Title: Simultaneous Effects of Viral Factors of HPV and EBV on progression of Breast and Thyroid Cancers: Application of Structural equation modeling; # 982759: Title: SCAD and MCP Penalized Logistics Regression for Identification of Novel Genes in Human Sputum Cells associated with Chronic Obstructive Pulmonary Disease (COPD) in High-Dimensional Data.

                        

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