Vikas Sood

Publications
Public outreach and news

Articles

Journal article: VIRUS RESEARCH. 2024;341:199306

Temporal cytokine storm dynamics in dengue infection predicts severity.

Bhatt P; Varma M; Sood V; Ambikan A; Jayaram A; Babu N; Gupta S; Mukhopadhyay C; Neogi U
Journal article: JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS. 2023;:1-16

Screening of potential inhibitors against structural proteins from Monkeypox and related viruses of Poxviridae family via docking and molecular dynamics simulation.

Kaur M; Sharma A; Kaur H; Singh M; Devi B; Naresh Raj AR; Sood V; Pandey A; Gartia J; Kumar R; Suresh Babu AR; Singh G; Barnwal RP
Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2023;120(37):e2304722120

Systems-level temporal immune-metabolic profile in Crimean-Congo hemorrhagic fever virus infection.

Ambikan AT; Elaldi N; Svensson-Akusjärvi S; Bagci B; Pektas AN; Hewson R; Bagci G; Arasli M; Appelberg S; Mardinoglu A; Sood V; Végvári Á; Benfeitas R; Gupta S; Cetin I; Mirazimi A; Neogi U
Article: BMC BIOINFORMATICS. 2023;24(1):141

iIL13Pred: improved prediction of IL-13 inducing peptides using popular machine learning classifiers.

Arora P; Periwal N; Goyal Y; Sood V; Kaur B
Article: COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING. 2023;26(14):2572-2574

COVID Vaccines vs. Viral Evolution: Who Will Win the Battle?

Sharma S; Sood V; Sharma D
Article: JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS. 2022;40(18):8216-8231

In silico characterization of mutations circulating in SARS-CoV-2 structural proteins.

Periwal N; Rathod SB; Pal R; Sharma P; Nebhnani L; Barnwal RP; Arora P; Srivastava KR; Sood V
Article: MICROBIOLOGY SPECTRUM. 2022;10(5):e0121922-e01222

Time Series Analysis of SARS-CoV-2 Genomes and Correlations among Highly Prevalent Mutations.

Periwal N; Rathod SB; Sarma S; Johar GS; Jain A; Barnwal RP; Srivastava KR; Kaur B; Arora P; Sood V
Article: VIRUS RESEARCH. 2022;320:198887

Novel insights into host responses to Japanese Encephalitis Virus infection: Reanalysis of public transcriptome and microRNAome datasets.

Rajput R; Periwal N; Mukherjee C; Verma P; Sharma J; Arora P; Kaur B; Sood V
Article: BIOCHIMIE. 2022;199:112-122

A novel binary k-mer approach for classification of coding and non-coding RNAs across diverse species.

Periwal N; Sharma P; Arora P; Pandey S; Kaur B; Sood V
Article: FRONTIERS IN MICROBIOLOGY. 2022;13:828430

Human Immunodeficiency Virus Type 1 Vif Up-Regulates the Expression of Tat via AKT Signaling Pathway: Role of Ubiquitin Specific Protease 17.

Lata S; Sood V; Banerjea AC
Article: FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY. 2022;12:966870

In silico analysis of SARS-CoV-2 genomes: Insights from SARS encoded non-coding RNAs.

Periwal N; Bhardwaj U; Sarma S; Arora P; Sood V
Article: FRONTIERS IN MICROBIOLOGY. 2021;12:784070

Replication of Dengue Virus in K562-Megakaryocytes Induces Suppression in the Accumulation of Reactive Oxygen Species.

Kaur J; Rawat Y; Sood V; Periwal N; Rathore DK; Kumar S; Kumar N; Bhattacharyya S
Article: FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY. 2021;11:674277

Clinical Predictors of COVID-19 Severity and Mortality: A Perspective.

Sharma J; Rajput R; Bhatia M; Arora P; Sood V
Article: MSYSTEMS. 2020;5(5):e00724-e00720

High-Throughput RNA Sequencing Analysis of Plasma Samples Reveals Circulating microRNA Signatures with Biomarker Potential in Dengue Disease Progression.

Saini J; Bandyopadhyay B; Pandey AD; Ramachandran VG; Das S; Sood V; Banerjee A; Vrati S
Article: SCIENTIFIC REPORTS. 2019;9(1):7594

Genetic Polymorphisms in the Open Reading Frame of the CCR5 gene From HIV-1 Seronegative and Seropositive Individuals From National Capital Regions of India.

Ronsard L; Sood V; Yousif AS; Ramesh J; Shankar V; Das J; Sumi N; Rai T; Mohankumar K; Sridharan S; Dorschel A; Ramachandran VG; Banerjea AC
Article: FASEB BIOADVANCES. 2019;1(4):265-278

Dengue NS5 modulates expression of miR-590 to regulate ubiquitin-specific peptidase 42 in human microglia.

Mishra R; Sood V; Banerjea AC
Article: FRONTIERS IN MICROBIOLOGY. 2019;10:114

Suppressor of Cytokine Signaling 3 (SOCS3) Degrades p65 and Regulate HIV-1 Replication.

Sood V; Lata S; Ramachandran VG; Banerjea AC
Article: JOURNAL OF INFECTION. 2017;75(6):541-554

Correlation of altered expression of a long non-coding RNA, NEAT1, in peripheral blood mononuclear cells with dengue disease progression.

Pandey AD; Goswami S; Shukla S; Das S; Ghosal S; Pal M; Bandyopadhyay B; Ramachandran V; Basu N; Sood V; Pandey P; Chakrabarti J; Vrati S; Banerjee A
Article: SCIENTIFIC REPORTS. 2017;7(1):8789

ATF3 negatively regulates cellular antiviral signaling and autophagy in the absence of type I interferons.

Sood V; Sharma KB; Gupta V; Saha D; Dhapola P; Sharma M; Sen U; Kitajima S; Chowdhury S; Kalia M; Vrati S
Article: TRANSLATIONAL RESEARCH. 2017;186:62-78.e9

RNA-Seq analysis of peripheral blood mononuclear cells reveals unique transcriptional signatures associated with disease progression in dengue patients.

Banerjee A; Shukla S; Pandey AD; Goswami S; Bandyopadhyay B; Ramachandran V; Das S; Malhotra A; Agarwal A; Adhikari S; Rahman M; Chatterjee S; Bhattacharya N; Basu N; Pandey P; Sood V; Vrati S
Article: NATURE COMMUNICATIONS. 2015;6:7244

HIV-1 Rev downregulates Tat expression and viral replication via modulation of NAD(P)H:quinine oxidoreductase 1 (NQO1).

Lata S; Ali A; Sood V; Raja R; Banerjea AC
Article: AUTOPHAGY. 2014;10(9):1637-1651

Japanese encephalitis virus replication is negatively regulated by autophagy and occurs on LC3-I- and EDEM1-containing membranes.

Sharma M; Bhattacharyya S; Nain M; Kaur M; Sood V; Gupta V; Khasa R; Abdin MZ; Vrati S; Kalia M
Article: JOURNAL OF VIROLOGY. 2013;87(16):8870-8883

Role of RNA interference (RNAi) in dengue virus replication and identification of NS4B as an RNAi suppressor.

Kakumani PK; Ponia SS; S RK; Sood V; Chinnappan M; Banerjea AC; Medigeshi GR; Malhotra P; Mukherjee SK; Bhatnagar RK
Article: PLOS ONE. 2013;8(12):e82128

Effect on HIV-1 gene expression, Tat-Vpr interaction and cell apoptosis by natural variants of HIV-1 Tat exon 1 and Vpr from Northern India.

Lata S; Ronsard L; Sood V; Dar SA; Ramachandran VG; Das S; Banerjea AC
Article: JOURNAL OF DERMATOLOGY. 2011;38(10):980-987

Possible role of superantigens in inducing autoimmunity in pemphigus patients.

Dar SA; Das S; Bhattacharya SN; Ramachandran VG; Ahmed T; Banerjee BD; Sonthalia S; Sood V; Banerjea AC
Article: AIDS RESEARCH AND HUMAN RETROVIRUSES. 2010;26(12):1299-1305

Diversity of HIV type 1 long terminal repeat (LTR) sequences following mother-to-child transmission in North India.

Neogi U; Sharma Y; Sood V; Wanchu A; Banerjea AC
Article: JOURNAL OF VIROLOGY. 2010;84(19):10395-10401

The 7a accessory protein of severe acute respiratory syndrome coronavirus acts as an RNA silencing suppressor.

Karjee S; Minhas A; Sood V; Ponia SS; Banerjea AC; Chow VTK; Mukherjee SK; Lal SK
Article: AIDS RESEARCH AND THERAPY. 2010;7:28

Genetic and functional analysis of HIV-1 Rev Responsive Element (RRE) sequences from North-India.

Sharma Y; Neogi U; Sood V; Banerjee S; Samrat S; Wanchu A; Singh S; Banerjea AC
Article: ANTIVIRAL RESEARCH. 2010;87(2):204-212

Potent inhibition of influenza virus replication with novel siRNA-chimeric-ribozyme constructs.

Kumar P; Sood V; Vyas R; Gupta N; Banerjea AC; Khanna M
Article: AIDS RESEARCH AND THERAPY. 2009;6:28

Genetic analysis of HIV-1 Circulating Recombinant Form 02_AG, B and C subtype-specific envelope sequences from Northern India and their predicted co-receptor usage.

Neogi U; Sood V; Chowdhury A; Das S; Ramachandran VG; Sreedhar VK; Wanchu A; Ghosh N; Banerjea AC
Article: JOURNAL OF GENERAL VIROLOGY. 2009;90(Pt 11):2768-2776

Genetic and functional characterization of human immunodeficiency virus type 1 VprC variants from north India: presence of unique recombinants with mosaic genomes from B, C and D subtypes within the open reading frame of Vpr.

Bano AS; Sood V; Neogi U; Goel N; Kuttiat VS; Wanchu A; Banerjea AC
Article: CLINICA CHIMICA ACTA. 2008;391(1-2):1-5

Risk for HIV-1 infection is not associated with repeat-region polymorphism in the DC-SIGN neck domain and novel genetic DC-SIGN variants among North Indians.

Rathore A; Chatterjee A; Sood V; Khan SZ; Banerjea AC; Yamamoto N; Dhole TN
Article: ARCHIVES OF VIROLOGY. 2008;153(10):1961-1966

Novel HIV-1 long terminal repeat (LTR) sequences of subtype B and mosaic intersubtype B/C recombinants in North India.

Neogi U; Sood V; Goel N; Wanchu A; Banerjea AC
Article: AIDS. 2007;21(1):31-40

Potent knock down of HIV-1 replication by targeting HIV-1 Tat/Rev RNA sequences synergistically with catalytic RNA and DNA.

Sood V; Unwalla H; Gupta N; Chakraborti S; Banerjea AC
Article: ANTISENSE AND NUCLEIC ACID DRUG DEVELOPMENT. 2007;17(1):113-121

DNA-enzyme-mediated cleavage of human immunodeficiency virus type 1 Gag RNA is significantly augmented by antisense-DNA molecules targeted to hybridize close to the cleavage site.

Sood V; Gupta N; Bano AS; Banerjea AC
Article: ANTISENSE AND NUCLEIC ACID DRUG DEVELOPMENT. 2007;17(4):465-472

HIV-1 VprB and C RNA cleavage by potent 10-23 DNAzymes that also cause reversal of G2 cell cycle arrest mediated by Vpr genes.

Bano AS; Gupta N; Sharma Y; Sood V; Banerjea AC
Article: ANTIVIRAL RESEARCH. 2006;72(2):134-144

Potent inhibition of HIV-1 gene expression and TAT-mediated apoptosis in human T cells by novel mono- and multitarget anti-TAT/Rev/Env ribozymes and a general purpose RNA-cleaving DNA-enzyme.

Unwalla H; Chakraborti S; Sood V; Gupta N; Banerjea AC
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Preprint: RESEARCH SQUARE. 2023

Parechovirus infection in human brain organoids: host innate inflammatory response and not neuro-infectivity correlates to neurologic disease

Capendale PE; García-Rodríguez I; Ambikan AT; Mulder LA; Depla JA; Freeze E; Koen G; Calitz C; Sood V; de Sá RV; Neogi U; Pajkrt D; Srid A; Wolthers KC
Review: VACCINES. 2023;11(3):593

Immune Control of Avian Influenza Virus Infection and Its Vaccine Development.

Dey P; Ahuja A; Panwar J; Choudhary P; Rani S; Kaur M; Sharma A; Kaur J; Yadav AK; Sood V; Suresh Babu AR; Bhadada SK; Singh G; Barnwal RP
Editorial comment: FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY. 2023;13:1145235

Editorial: Severe acute respiratory syndrome coronavirus 2: Host-pathogen interactions and cellular signaling - vol II.

Sood V; Meseko CA
Review: WILEY INTERDISCIPLINARY REVIEWS-RNA. 2022;13(5):e1711

RNA thermometers and other regulatory elements: Diversity and importance in bacterial pathogenesis.

Sharma A; Alajangi HK; Pisignano G; Sood V; Singh G; Barnwal RP
Review: JOURNAL OF MOLECULAR BIOLOGY. 2022;434(5):167403

Where all the Roads Meet? A Crossover Perspective on Host Factors Regulating SARS-CoV-2 infection.

Lata S; Mishra R; Arya RP; Arora P; Lahon A; Banerjea AC; Sood V
Editorial comment: FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY. 2021;11:708484

Editorial: Emerging Concepts in Dengue Pathogenesis and Host Innate Immune Response.

Kumar B; Yong YK; Sood V
Review: FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY. 2020;10:588168

Regulation of Host Innate Immunity by Non-Coding RNAs During Dengue Virus Infection.

Rajput R; Sharma J; Nair MT; Khanna M; Arora P; Sood V
Review: INDIAN JOURNAL OF MEDICAL RESEARCH. 2011;134(6):769-778

Genetic architecture of HIV-1 genes circulating in north India & their functional implications.

Neogi U; Sood V; Ronsard L; Singh J; Lata S; Ramachandran VG; Das S; Wanchu A; Banerjea AC
Published conference paper: INDIAN JOURNAL OF EXPERIMENTAL BIOLOGY. 2009;47(6):424-431

Global HIV-1 molecular epidemiology with special reference to genetic analysis of HIV-1 subtypes circulating in North India: functional and pathogenic implications of genetic variation.

Neogi U; Sood V; Banerjee S; Ghosh N; Verma S; Samrat S; Sharma Y; Saxena A; Husain S; Ramachandran VG; Das S; Sreedhar KV; Goel N; Wanchu A; Banerjea AC
Letter: AIDS. 2008;22(13):1683-1685

Functional analysis of HIV-1 subtypes B and C HIV-1 Tat exons and RGD/QGD motifs with respect to Tat-mediated transactivation and apoptosis.

Sood V; Ranjan R; Banerjea AC
Letter: AIDS. 2007;21(13):1832-1834

Vpr from HIV-1 subtypes B and C exhibit significant differences in their ability to transactivate LTR-mediated gene expression and also in their ability to promote apoptotic DNA ladder formation.

Bano AS; Gupta N; Sood V; Banerjea AC
Letter: AIDS. 2007;21(11):1491-1492

X Protein of hepatitis B virus potently activates HIV-1 subtype C long terminal repeat promoter: implications for faster spread of HIV-1 subtype C.

Gupta N; Sood V; Bano AS; Banerjea AC
Letter: AIDS. 2007;21(1):116-118

Basal RANTES promoter activity differs considerably among different species of monkeys: implications for HIV-1/AIDS progression.

Sood V; Gupta N; Shanker V; Bano AS; Banerjea AC

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