Federico Ansaloni

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Articles

Journal article: NATURE PROTOCOLS. 2024;19(3):791-830

Nano-CUT&Tag for multimodal chromatin profiling at single-cell resolution.

Bárcenas-Walls JR; Ansaloni F; Hervé B; Strandback E; Nyman T; Castelo-Branco G; Bartošovič M
Journal article: NATURE COMMUNICATIONS. 2023;14(1):4974

LINE-1 regulates cortical development by acting as long non-coding RNAs.

Mangoni D; Simi A; Lau P; Armaos A; Ansaloni F; Codino A; Damiani D; Floreani L; Di Carlo V; Vozzi D; Persichetti F; Santoro C; Pandolfini L; Tartaglia GG; Sanges R; Gustincich S
Journal article: DEVELOPMENTAL CELL. 2023;58(2):155-170.e8

The miR-430 locus with extreme promoter density forms a transcription body during the minor wave of zygotic genome activation.

Hadzhiev Y; Wheatley L; Cooper L; Ansaloni F; Whalley C; Chen Z; Finaurini S; Gustincich S; Sanges R; Burgess S; Beggs A; Müller F
Journal article: FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY. 2023;11:1124266

In silico characterisation of minor wave genes and LINE-1s transcriptional dynamics at murine zygotic genome activation.

Ansaloni F; Gustincich S; Sanges R
Journal article: BIOMEDICINES. 2022;10(12):3279

Transposons Acting as Competitive Endogenous RNAs: In-Silico Evidence from Datasets Characterised by L1 Overexpression.

Esposito M; Gualandi N; Spirito G; Ansaloni F; Gustincich S; Sanges R
Journal article: BIOINFORMATICS. 2022;38(18):4430-4433

TEspeX: consensus-specific quantification of transposable element expression preventing biases from exonized fragments.

Ansaloni F; Gualandi N; Esposito M; Gustincich S; Sanges R
Journal article: BIOLOGY-BASEL. 2022;11(6):826

Meta-Analysis Suggests That Intron Retention Can Affect Quantification of Transposable Elements from RNA-Seq Data.

Gualandi N; Iperi C; Esposito M; Ansaloni F; Gustincich S; Sanges R
Journal article: BMC BIOLOGY. 2022;20(1):116

Identification of LINE retrotransposons and long non-coding RNAs expressed in the octopus brain.

Petrosino G; Ponte G; Volpe M; Zarrella I; Ansaloni F; Langella C; Di Cristina G; Finaurini S; Russo MT; Basu S; Musacchia F; Ristoratore F; Pavlinic D; Benes V; Ferrante MI; Albertin C; Simakov O; Gustincich S; Fiorito G; Sanges R
Journal article: ISCIENCE. 2022;25(1):103702

Transposable element activation promotes neurodegeneration in a Drosophila model of Huntington's disease.

Casale AM; Liguori F; Ansaloni F; Cappucci U; Finaurini S; Spirito G; Persichetti F; Sanges R; Gustincich S; Piacentini L
Journal article: CELL REPORTS. 2021;36(11):109694

The prolyl-isomerase PIN1 is essential for nuclear Lamin-B structure and function and protects heterochromatin under mechanical stress.

Napoletano F; Ferrari Bravo G; Voto IAP; Santin A; Celora L; Campaner E; Dezi C; Bertossi A; Valentino E; Santorsola M; Rustighi A; Fajner V; Maspero E; Ansaloni F; Cancila V; Valenti CF; Santo M; Artimagnella OB; Finaurini S; Gioia U; Polo S; Sanges R; Tripodo C; Mallamaci A; Gustincich S; d'Adda di Fagagna F; Mantovani F; Specchia V; Del Sal G
Journal article: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 2021;22(4):1812

Cold Adaptation in Antarctic Notothenioids: Comparative Transcriptomics Reveals Novel Insights in the Peculiar Role of Gills and Highlights Signatures of Cobalamin Deficiency.

Ansaloni F; Gerdol M; Torboli V; Fornaini NR; Greco S; Giulianini PG; Coscia MR; Miccoli A; Santovito G; Buonocore F; Scapigliati G; Pallavicini A
Journal article: FRONTIERS IN CELLULAR NEUROSCIENCE. 2021;15:743797

Analysis of LINE1 Retrotransposons in Huntington's Disease.

Floreani L; Ansaloni F; Mangoni D; Agostoni E; Sanges R; Persichetti F; Gustincich S
Journal article: BMC BIOINFORMATICS. 2019;20(Suppl 9):484

Exploratory analysis of transposable elements expression in the C. elegans early embryo.

Ansaloni F; Scarpato M; Di Schiavi E; Gustincich S; Sanges R

All other publications

Preprint: BIORXIV. 2023

Paternal starvation affects metabolic gene expression during zebrafish offspring development and life-long fitness

Jimenez-Gonzalez A; Ansaloni F; Nebendahl C; Alavioon G; Murray D; Robak W; Sanges R; Müller F; Immler S
Preprint: BIORXIV. 2023

Internal Ribosome Entry Sites act as Effector Domain in linear and circular antisense long non-coding SINEUP RNAs

D’Agostino S; Tettey-Matey A; Volpe M; Pierattini B; Ansaloni F; Lau P; Bon C; Peruzzo O; Braccia C; Armirotti A; Scarpato M; Damiani D; Carlo VD; Broglia L; Bechara E; Tartaglia GG; Carninci P; Santoro C; Persichetti F; Pandolfini L; Espinoza S; Zucchelli S; Sanges R; Gustincich S
Preprint: BIORXIV. 2023

The Pgbd5 DNA transposase is required for mouse cerebral cortex development through DNA double-strand breaks formation

Simi A; Ansaloni F; Damiani D; Codino A; Mangoni D; Lau P; Vozzi D; Pandolfini L; Sanges R; Gustincich S
Conference publication: MULTIPLE SCLEROSIS JOURNAL. 2023;29:803-804

Exploring the role of endogenous retroviruses in the immune oligodendroglia lineage in multiple sclerosis

Ansaloni F; Carlstrom K; Holzleitner N; Kabbe M; Castelo-Branco G

Employments

Postdoctoral Researcher, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, 2023-2024
Affiliated to Research, Department of Medical Biochemistry and Biophysics, Karolinska Institutet, 2022-2024
Postdoctoral fellow, Non-coding RNAs and RNA-based therapeutics, Italian Institute of Technology, 2021-2022
PhD, International School for Advanced Studies, 2016-2020

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