Roman Zubarev

Articles

Article: JOURNAL OF INVESTIGATIVE DERMATOLOGY. 2024;:S0022-202X(24)03014-8
The Temporal Dynamics of Proteins in Aged Skin Wound Healing and Comparison with Gene Expression.
Torres M; Silberberg G; Vegvari A; Zubarev RA; Hunt M; Bansal R; Bachar-Wikstrom E; Wikstrom JD
Journal article: ANALYTICAL CHEMISTRY. 2024;96(48):18917-18921
One-Pot Time-Induced Proteome Integral Solubility Alteration Assay for Automated and Sensitive Drug-Target Identification
Meng Z; Saei AA; Lyu H; Gaetani M; Zubarev RA
Journal article: JOURNAL OF ANALYTICAL CHEMISTRY. 2024;79(14):2023-2030
A Mass Spectrometry Study of Populational Changes in the Amphibian Skin Peptidomes on an Example of Moor Frog Rana arvalis Belonging to the Siberian, Slovenian, and Moscow Populations
Vasileva ID; Samgina TY; Meng Z; Zubarev RA; Lebedev AT
Article: ADVANCED SCIENCE. 2024;11(38):e2401502
Multifaceted Proteome Analysis at Solubility, Redox, and Expression Dimensions for Target Identification
Saei AA; Lundin A; Lyu H; Gharibi H; Luo H; Teppo J; Zhang X; Gaetani M; Vegvari A; Holmdahl R; Gygi SP; Zubarev RA
Journal article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2024;121(37):e2412390121
Active involvement of compartmental, inter- and Active involvement of compartmental, inter- and intramolecular deuterium disequilibrium in adaptive biology intramolecular deuterium disequilibrium in adaptive biology
Boros LG; Seneff S; Turi M; Palcsu L; Zubarev RA
Article: ENDOCRINE-RELATED CANCER. 2024;31(9):e230061
Genetic variants and down-regulation of CACNA1H in pheochromocytoma
Svahn F; Hose KS; Stenman A; Liu Y; Calissendorff J; Tham E; Vegvari A; Zubarev RA; Wang N; Korah R; Carling T; Zedenius J; Branstrom R; Juhlin CC; Larsson C
Article: ANALYTICAL CHEMISTRY. 2024;96(33):13533-13541
Gel-Assisted Proteome Position Integral Shift Assay Returns Molecular Weight to Shotgun Proteomics and Identifies Caspase 3 Substrates
Meng Z; Saei AA; Gharibi H; Zhang X; Lyu H; Lundstrom SL; Vegvari A; Gaetani M; Zubarev RA
Journal article: ANALYTICAL CHEMISTRY. 2024;96(29):12057-12064
EThcD as a Unique Tool for the Top-Down De Novo Sequencing of Intact Natural Ranid Amphibian Peptides
Samgina TY; Vasileva ID; Zubarev RA; Lebedev AT
Article: HEPATOLOGY. 2024;79(6):1337-1351
Wnt/β-catenin and NFκB signaling synergize to trigger growth-factor-free regeneration of adult primary human hepatocytes
Oliva-Vilarnau N; Beusch CM; Sabatier P; Sakaraki E; Tjaden A; Graetz L; Buettner FA; Dorotea D; Nguyen M; Bergqvist F; Sundstrom Y; Mueller S; Zubarev RA; Schulte G; Tredup C; Gramignoli R; Tietge UJF; Lauschke VM
Article: NATURE COMMUNICATIONS. 2024;15(1):4513
Proteomic analysis of the urothelial cancer landscape
Dressler FF; Diedrichs F; Sabtan D; Hinrichs S; Krisp C; Gemoll T; Hennig M; Mackedanz P; Schlotfeldt M; Voss H; Offermann A; Kirfel J; Roesch MC; Struck JP; Kramer MW; Merseburger AS; Gratzke C; Schoeb DS; Miernik A; Schlueter H; Wetterauer U; Zubarev R; Perner S; Wolf P; Vegvari A
Article: INTERNATIONAL JOURNAL OF ORAL SCIENCE. 2024;16(1):43
A multi-platform analysis of human gingival crevicular fluid reveals ferroptosis as a relevant regulated cell death mechanism during the clinical progression of periodontitis
Torres A; Michea MA; Vegvari A; Arce M; Perez V; Alcota M; Morales A; Vernal R; Budini M; Zubarev RA; Gonzalez FE
Article: JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY. 2024;35(5):902-911
Adding Color to Mass Spectra of Biopolymers: Charge Determination Analysis (CHARDA) Assigns Charge State to Every Ion Peak
Lyutvinskiy Y; Nagornov KO; Kozhinov AN; Gasilova N; Menin L; Meng Z; Zhang X; Saei AA; Fu T; Chamot-Rooke J; Tsybin YO; Makarov A; Zubarev RA
Journal article: CANCER RESEARCH. 2024;84(6_Supplement):5138
Abstract 5138: Proteomic analyses of the urothelial cancer landscape reveal highly distinct prognostic and predictive subtypes
Dressler FF; Diedrichs F; Sabtan D; Hinrichs S; Mackedanz P; Schlotfeldt M; Krisp C; Hennig M; Schlueter H; Wetterauer U; Zubarev R; Horst D; Perner S; Wolf P; Végvári Á
Article: ACS PHARMACOLOGY AND TRANSLATIONAL SCIENCE. 2024;7(3):787-796
Chemical Proteomics Reveals that the Anticancer Drug Everolimus Affects the Ubiquitin-Proteasome System
Lobas AA; Saei AA; Lyu H; Zubarev RA; Gorshkov MV
Journal article: ANGEWANDTE CHEMIE-INTERNATIONAL EDITION. 2024;136(3)
Ultralight Ultrafast Enzymes**
Zhang X; Meng Z; Beusch CM; Gharibi H; Cheng Q; Lyu H; Di Stefano L; Wang J; Saei AA; Végvári Á; Gaetani M; Zubarev RA
Article: ANGEWANDTE CHEMIE-INTERNATIONAL EDITION. 2024;63(3):e202316488
Ultralight Ultrafast Enzymes
Zhang X; Meng Z; Beusch CM; Gharibi H; Cheng Q; Lyu H; Di Stefano L; Wang J; Saei AA; Vegvari A; Gaetani M; Zubarev RA
Journal article: JOURNAL OF PHARMACEUTICAL ANALYSIS. 2024;14(1):100-114
Distinct molecular targets of ProEGCG from EGCG and superior inhibition of angiogenesis signaling pathways for treatment of endometriosis
Hung SW; Gaetani M; Li Y; Tan Z; Zheng X; Zhang R; Ding Y; Man GCW; Zhang T; Song Y; Wang Y; Chung JPW; Chan TH; Zubarev RA; Wang CC
Journal article: FRONTIERS IN PLANT SCIENCE. 2024;15:1476497
Differential impact of plant-based selenium nanoparticles on physio-biochemical properties, antioxidant defense system and protein regulation in fruits of huanglongbing-infected 'Kinnow' mandarin plants
Ikram M; Raja NI; Mohamed AH; Mashwani Z-U; Omar AA; Gharibi H; Zubarev RA
Article: JOURNAL OF EXPERIMENTAL MEDICINE. 2023;220(11):e20230101
Antigen-presenting autoreactive B cells activate regulatory T cells and suppress autoimmune arthritis in mice.
Aoun M; Coelho A; Krämer A; Saxena A; Sabatier P; Beusch CM; Lönnblom E; Geng M; Do N-N; Xu Z; Zhang J; He Y; Romero Castillo L; Abolhassani H; Xu B; Viljanen J; Rorbach J; Fernandez Lahore G; Gjertsson I; Kastbom A; Sjöwall C; Kihlberg J; Zubarev RA; Burkhardt H; Holmdahl R
Article: EXPERIMENTAL HEMATOLOGY. 2023;127:40-51
Functional and molecular profiling of hematopoietic stem cells during regeneration
Rydstrom A; Grahn THM; Niroula A; Mansell E; van der Garde M; Pertesi M; Subramaniam A; Soneji S; Zubarev R; Enver T; Nilsson B; Miharada K; Larsson J; Karlssona S
Article: MOLECULES. 2023;28(20):7118
Tandem Mass Spectrometry de novo Sequencing of the Skin Defense Peptides of the Central Slovenian Agile Frog Rana dalmatina
Samgina TY; Vasileva ID; Trebse P; Torkar G; Surin AK; Meng Z; Zubarev RA; Lebedev AT
Article: NATURE COMMUNICATIONS. 2023;14(1):6243
GLP-1R signaling neighborhoods associate with the susceptibility to adverse drug reactions of incretin mimetics
Wright SC; Motso A; Koutsilieri S; Beusch CM; Sabatier P; Berghella A; Blondel-Tepaz E; Mangenot K; Pittarokoilis I; Sismanoglou D-C; Le Gouill C; Olsen JV; Zubarev RA; Lambert NA; Hauser AS; Bouvier M; Lauschke VM
Article: JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY. 2023;34(10):2098-2106
Toward Single Bacterium Proteomics
Vegvari A; Zhang X; Zubarev RA
Article: JOURNAL OF PERIODONTAL RESEARCH. 2023;58(5):1061-1081
Proteomic profile of human gingival crevicular fluid reveals specific biological and molecular processes during clinical progression of periodontitis
Torres A; Michea MA; Vegvari A; Arce M; Morales A; Lanyon E; Alcota M; Fuentes C; Vernal R; Budini M; Zubarev RA; Gonzalez FE
Article: NATURE COMMUNICATIONS. 2023;14(1):5949
A subset of type-II collagen-binding antibodies prevents experimental arthritis by inhibiting FCGR3 signaling in neutrophils
Xu Z; Xu B; Lundstrom SL; Moreno-Giro A; Zhao D; Martin M; Lonnblom E; Li Q; Kramer A; Ge C; Cheng L; Liang B; Tong D; Stawikowska R; Blom AM; Fields GB; Zubarev RA; Holmdahl R
Article: MOLECULES. 2023;28(19):6768
Massive Solubility Changes in Neuronal Proteins upon Simulated Traumatic Brain Injury Reveal the Role of Shockwaves in Irreversible Damage
Saei AA; Gharibi H; Lyu H; Nilsson B; Jafari M; Von Holst H; Zubarev RA
Article: JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY. 2023;34(9):1979-1988
EThcD Benefits for the Sequencing Inside Intramolecular Disulfide Cycles of Amphibian Intact Peptides
Vasileva IDD; Samgina TY; Meng Z; Zubarev RAA; Lebedev ATT
Article: CELLULAR AND MOLECULAR LIFE SCIENCES. 2023;80(9):268
Analysis of local extracellular matrix identifies different aetiologies behind bicuspid and tricuspid aortic valve degeneration and suggests therapies
Beusch CM; Simonson OE; Wedin JO; Sabatier P; Felldin U; Kadekar S; Osterholm C; Vegvari A; Zubarev RA; Fromell K; Nilson B; James S; Stahle E; Grinnemo K-H; Rodin S
Article: MOLECULAR & CELLULAR PROTEOMICS. 2023;22(7):100589
SpotLight Proteomics Identifies Variable Sequences of Blood Antibodies Specific Against Deamidated Human Serum Albumin
Wang J; Lundstroem SL; Lu W; Huang Y; Rodin S; Zubarev RA
Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2023;120(25):e2218668120
Therapy targeting antigen-specific T cells by a peptide-based tolerizing vaccine against autoimmune arthritis.
Urbonaviciute V; Romero-Castillo L; Xu B; Luo H; Schneider N; Weisse S; Do N-N; Oliveira-Coelho A; Fernandez Lahore G; Li T; Sabatier P; Beusch CM; Viljanen J; Zubarev RA; Kihlberg J; Bäcklund J; Burkhardt H; Holmdahl R
Article: ANGEWANDTE CHEMIE-INTERNATIONAL EDITION. 2023;62(24):e202216610
DOPA Residues Endow Collagen with Radical Scavenging Capacity
Kurth M; Barayeu U; Gharibi H; Kuzhelev A; Riedmiller K; Zilke J; Noack K; Denysenkov V; Kappl R; Prisner TF; Zubarev RA; Dick TP; Graeter F
Journal article: ANGEWANDTE CHEMIE-INTERNATIONAL EDITION. 2023;135(24)
DOPA Residues Endow Collagen with Radical Scavenging Capacity**
Kurth M; Barayeu U; Gharibi H; Kuzhelev A; Riedmiller K; Zilke J; Noack K; Denysenkov V; Kappl R; Prisner TF; Zubarev RA; Dick TP; Gräter F
Article: JCI INSIGHT. 2023;8(7):e164875
NCF1-dependent production of ROS protects against lupus by regulating plasmacytoid dendritic cell development and functions
Luo H; Urbonaviciute V; Saei AA; Lyu H; Gaetani M; Vegvari A; Li Y; Zubarev RA; Holmdahl R
Article: ALZHEIMERS & DEMENTIA. 2023;19(4):1491-1502
Testing the link between isoaspartate and Alzheimer's disease etiology
Wang J; Guo C; Meng Z; Zwan MD; Chen X; Seelow S; Lundstrom SL; Rodin S; Teunissen CE; Zubarev RA
Journal article: THE PROJECT REPOSITORY JOURNAL. 2023;16(1):42-46
The TopSpec system: new levels in antibody characterisation by top-down mass spectrometry
Zubarev R
Article: NATURE COMMUNICATIONS. 2023;14(1):691
A subset of antibodies targeting citrullinated proteins confers protection from rheumatoid arthritis
He Y; Ge C; Moreno-Giro A; Xu B; Beusch CM; Sandor K; Su J; Cheng L; Lonnblom E; Lundqvist C; Slot LM; Tong D; Urbonaviciute V; Liang B; Li T; Lahore GF; Aoun M; Malmstrom V; Rispens T; Ernfors P; Svensson CI; Scherer HU; Toes REM; Gjertsson I; Ekwall O; Zubarev RA; Holmdahl R
Article: INTERNATIONAL JOURNAL OF MASS SPECTROMETRY. 2023;484:116984
Mass spectrometry in de novo sequencing of the skin peptides from Arkhangelsk, Russia Rana temporaria: The variability of secreted AMPs in different populations
Samgina TY; Vasilieva ID; Kozhevnikov AY; Meng Z; Zubarev RA; Lebedev AT
Article: JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY. 2023;34(2):137-144
Analysis of Isotopically Depleted Proteins Derived from Escherichia coli and Caenorhabditis elegans Cell Lines by Liquid Chromatography 21 T Fourier Transform-Ion Cyclotron Resonance Mass Spectrometry
Popovic Z; Anderson LC; Zhang X; Butcher DS; Blakney GT; Zubarev RA; Marshall AG
Article: METHODS IN MOLECULAR BIOLOGY. 2023;2554:91-106
Proteome Integral Solubility Alteration (PISA) for High-Throughput Ligand Target Deconvolution with Increased Statistical Significance and Reduced Sample Amount.
Gaetani M; Zubarev RA
Article: FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY. 2023;13:1085908
Non-typeable Haemophilus influenzae major outer membrane protein P5 contributes to bacterial membrane stability, and affects the membrane protein composition crucial for interactions with the human host
Su Y-C; Kadari M; Straw MLL; Janouskova M; Jonsson S; Thofte O; Jalalvand F; Matuschek E; Sandblad L; Vegvari A; Zubarev RAA; Riesbeck K
Article: FRONTIERS IN IMMUNOLOGY. 2023;14:1149107
Brain endothelial cells exposure to malaria parasites links type I interferon signalling to antigen presentation, immunoproteasome activation, endothelium disruption, and cellular metabolism
Shafi AM; Vegvari A; Zubarev RA; Penha-Goncalves C
Article: BIOMARKER RESEARCH. 2022;10(1):91
Deamidation-related blood biomarkers show promise for early diagnostics of neurodegeneration
Wang J; Zhang Y-R; Shen X-N; Han J; Cui M; Tan L; Dong Q; Zubarev RA; Yu J-T
Journal article: ALZHEIMERS & DEMENTIA. 2022;18(S6)
Isoaspartate as a biomarker for early diagnostics of neurodegenerative diseases
Wang J; Zhang Y; Shen X; Han J; Cui M; Tan L; Dong Q; Zubarev RA; Yu J
Article: BIO-PROTOCOL. 2022;12(22):e4556
Proteome Integral Solubility Alteration (PISA) Assay in Mammalian Cells for Deep, High-Confidence, and High-Throughput Target Deconvolution
Zhang X; Lytovchenko O; Lundstrom SL; Zubarev RA; Gaetani M
Article: ANALYTICAL CHEMISTRY. 2022;94(45):15772-15780
System-Wide Profiling by Proteome Integral Solubility Alteration Assay of Drug Residence Times for Target Characterization
Sabatier P; Beusch CM; Meng Z; Zubarev RA
Journal article: THE PROJECT REPOSITORY JOURNAL. 2022;15(1):38-41
Next-generation precision antibody profiling; from science fiction to reality
Zubarev R
Article: ANALYTICAL CHEMISTRY. 2022;94(43):15048-15056
Proteomics-Compatible Fourier Transform Isotopic Ratio Mass Spectrometry of Polypeptides
Gharibi H; Chernobrovkin AL; Saei AA; Zhang X; Gaetani M; Makarov AA; Zubarev RA
Article: JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY. 2022;33(10):1990-2007
The Omnitrap Platform: A Versatile Segmented Linear Ion Trap for Multidimensional Multiple-Stage Tandem Mass Spectrometry
Papanastasiou D; Kounadis D; Lekkas A; Orfanopoulos I; Mpozatzidis A; Smyrnakis A; Panagiotopoulos E; Kosmopoulou M; Reinhardt-Szyba M; Fort K; Makarov A; Zubarev RA
Article: JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY. 2022;33(8):1480-1491
Mass Spectrometry Differentiation between Rana arvalis Populations Based on Their Skin Peptidome Composition
Samgina TY; Vasileva ID; Trebse P; Torkar G; Surin AK; Meng Z; Zubarev RA; Lebedev AT
Article: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 2022;23(15):8371
First Experimental Evidence for Reversibility of Ammonia Loss from Asparagine
Wang J; Rodin S; Saei AA; Zhang X; Zubarev RA
Article: ANALYTICAL CHEMISTRY. 2022;94(26):9261-9269
Single-Cell Chemical Proteomics (SCCP) Interrogates the Timing and Heterogeneity of Cancer Cell Commitment to Death
Vegvari A; Rodriguez JE; Zubarev RA
Article: NATURE COMMUNICATIONS. 2022;13(1):3798
Biomarkers of nanomaterials hazard from multi-layer data
Fortino V; Kinaret PAS; Fratello M; Serra A; Saarimaki LA; Gallud A; Gupta G; Vales G; Correia M; Rasool O; Ytterberg J; Monopoli M; Skoog T; Ritchie P; Moya S; Vazquez-Campos S; Handy R; Grafstrom R; Tran L; Zubarev R; Lahesmaa R; Dawson K; Loeschner K; Larsen EH; Krombach F; Norppa H; Kere J; Savolainen K; Alenius H; Fadeel B; Greco D
Article: CHEMICAL SCIENCE. 2022;13(24):7240-7246
Ultrafast and selective labeling of endogenous proteins using affinity-based benzotriazole chemistry
Xin X; Zhang Y; Gaetani M; Lundstrom SL; Zubarev RA; Zhou Y; Corkery DP; Wu Y-W
Article: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 2022;23(13):6882
Haptoglobin Induces a Specific Proteomic Profile and a Mature-Associated Phenotype on Primary Human Monocyte-Derived Dendritic Cells
Torres A; Vivanco S; Lavin F; Pereda C; Chernobrovkin A; Gleisner A; Alcota M; Larrondo M; Lopez MN; Salazar-Onfray F; Zubarev RA; Gonzalez FE
Article: NATURE METABOLISM. 2022;4(6):739-758
Impaired oxygen-sensitive regulation of mitochondrial biogenesis within the von Hippel-Lindau syndrome
Li S; Li W; Yuan J; Bullova P; Wu J; Zhang X; Liu Y; Plescher M; Rodriguez J; Bedoya-Reina OC; Jannig PR; Valente-Silva P; Yu M; Henriksson MA; Zubarev RA; Smed-Sorensen A; Suzuki CK; Ruas JL; Holmberg J; Larsson C; Christofer Juhlin C; von Kriegsheim A; Cao Y; Schlisio S
Article: ELIFE. 2022;11:e74549
Redox regulation of PTPN22 affects the severity of T-cell-dependent autoimmune inflammation
James J; Chen Y; Hernandez CM; Forster F; Dagnell M; Cheng Q; Saei AA; Gharibi H; Lahore GF; astrand A; Malhotra R; Malissen B; Zubarev RA; Arner ESJ; Holmdahl R
Article: ANALYTICAL CHEMISTRY. 2022;94(19):7066-7074
Ion-Based Proteome-Integrated Solubility Alteration Assays for Systemwide Profiling of Protein-Molecule Interactions
Beusch CM; Sabatier P; Zubarev RA
Article: STRUCTURE. 2022;30(5):733-742.e7
A "spindle and thread"mechanism unblocks p53 translation N-terminal disorder
Kaldmae M; Vosselman T; Zhong X; Lama D; Chen G; Saluri M; Kronqvist N; Siau JW; Ng AS; Ghadessy FJ; Sabatier P; Vojtesek B; Sarr M; Sahin C; Osterlund N; Ilag LL; Vaananen VA; Sedimbi S; Arsenian-Henriksson M; Zubarev RA; Nilsson L; Koeck PJB; Rising A; Abelein A; Fritz N; Johansson J; Lane DP; Landreh M
Article: JOURNAL OF MASS SPECTROMETRY. 2022;57(4):e4822
A mass spectrometry-based non-radioactive differential radial capillary action of ligand assay (DRaCALA) to assess ligand binding to proteins
Cimdins-Ahne A; Chernobrovkin A; Kim S-K; Lee VT; Zubarev RA; Romling U
Article: ACS CATALYSIS. 2022;12(6):3397-3409
Conformational Selection in Biocatalytic Plastic Degradation by PETase
Guo B; Vanga SR; Lopez-Lorenzo X; Saenz-Mendez P; Ericsson SR; Fang Y; Ye X; Schriever K; Backstrom E; Biundo A; Zubarev RA; Furo I; Hakkarainen M; Syren P-O
Article: JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. 2022;144(6):2484-2487
Abnormal (Hydroxy)proline Deuterium Content Redefines Hydrogen Chemical Mass
Gharibi H; Chernobrovkin AL; Eriksson G; Saei AA; Timmons Z; Kitchener AC; Kalthoff DC; Liden K; Makarov AA; Zubarev RA
Article: JOURNAL OF BIOLOGICAL CHEMISTRY. 2022;298(2):101531
The antimicrobial drug pyrimethamine inhibits STAT3 transcriptional activity by targeting the enzyme dihydrofolate reductase
Heppler LN; Attarha S; Persaud R; Brown JI; Wang P; Petrova B; Tosic I; Burton FB; Flamand Y; Walker SR; Yeh JE; Zubarev RA; Gaetani M; Kanarek N; Page BDG; Frank DA
Article: FRONTIERS IN ONCOLOGY. 2022;12:852980
Comprehensive Target Screening and Cellular Profiling of the Cancer-Active Compound b-AP15 Indicate Abrogation of Protein Homeostasis and Organelle Dysfunction as the Primary Mechanism of Action
Gubat J; Selvaraju K; Sjoestrand L; Kumar Singh D; Turkina MV; Schmierer B; Sabatier P; Zubarev RA; Linder S; D'Arcy P
Article: FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY. 2022;12:984955
Protein domain-dependent vesiculation of Lipoprotein A, a protein that is important in cell wall synthesis and fitness of the human respiratory pathogen Haemophilus influenzae
Jalalvand F; Su Y-C; Manat G; Chernobrovkin A; Kadari M; Jonsson S; Janouskova M; Rutishauser D; Semsey S; Lobner-Olesen A; Sandblad L; Flardh K; Mengin-Lecreulx D; Zubarev RA; Riesbeck K
Article: METHODS IN MOLECULAR BIOLOGY. 2022;2386:113-127
Single Cell Proteomics Using Multiplexed Isobaric Labeling for Mass Spectrometric Analysis.
Végvári Á; Rodriguez JE; Zubarev RA
Article: NATURE COMMUNICATIONS. 2021;12(1):6558
An integrative proteomics method identifies a regulator of translation during stem cell maintenance and differentiation
Sabatier P; Beusch CM; Saei AA; Aoun M; Moruzzi N; Coelho A; Leijten N; Nordenskjold M; Micke P; Maltseva D; Tonevitsky AG; Millischer V; Villaescusa JC; Kadekar S; Gaetani M; Altynbekova K; Kel A; Berggren P-O; Simonson O; Grinnemo K-H; Holmdahl R; Rodin S; Zubarev RA
Article: REDOX BIOLOGY. 2021;48:102184
Comprehensive chemical proteomics analyses reveal that the new TRi-1 and TRi-2 compounds are more specific thioredoxin reductase 1 inhibitors than auranofin
Sabatier P; Beusch CM; Gencheva R; Cheng Q; Zubarev R; Arner ESJ
Article: MOLECULES. 2021;26(21):6709
First Immunoassay for Measuring Isoaspartate in Human Serum Albumin
Wang J; Lundstrom SL; Seelow S; Rodin S; Meng Z; Astorga-Wells J; Jia Q; Zubarev RA
Article: NATURE COMMUNICATIONS. 2021;12(1):5565
Polymorphic estrogen receptor binding site causes Cd2-dependent sex bias in the susceptibility to autoimmune diseases
Lahore GF; Forster M; Johannesson M; Sabatier P; Lonnblom E; Aoun M; He Y; Nandakumar KS; Zubarev RA; Holmdahl R
Article: ANALYTICAL AND BIOANALYTICAL CHEMISTRY. 2021;413(21):5333-5347
Differentiation of Central Slovenian and Moscow populations of Rana temporaria frogs using peptide biomarkers of temporins family
Samgina TY; Vasileva ID; Kovalev SV; Trebse P; Torkar G; Surin AK; Zubarev RA; Lebedev AT
Journal article: HUMAN REPRODUCTION. 2021;36(Supplement_1):deab127.013
O-145 Green Tea catechins EGCG and pro-drug of EGCG (Pro-EGCG) inhibit endometriosis through targeting molecules regulating macrophages and B cells
Hung SW; Gaetani M; Tan ZYR; Zhang RZ; Zubarev RA; Wang CC
Article: IRANIAN JOURNAL OF KIDNEY DISEASES. 2021;15(2):121-133
Predictive Biomarker Panel in Proliferative Lupus Nephritis, Two-Dimensional Shotgun
Ghasemi M; Kalantari S; Zubarev RA; Nafar M; Saei AA; Heidari S-S; Baghestani AR; Samavat S
Article: NATURE COMMUNICATIONS. 2021;12(1):1296
System-wide identification and prioritization of enzyme substrates by thermal analysis
Saei AA; Beusch CM; Sabatier P; Wells JA; Gharibi H; Meng Z; Chernobrovkin A; Rodin S; Nareoja K; Thorsell A-G; Karlberg T; Cheng Q; Lundstrom SL; Gaetani M; Vegvari A; Arner ESJ; Schuler H; Zubarev RA
Article: CURRENT PROTOCOLS IN PROTEIN SCIENCE. 2020;102(1):e114
Histone Purification Combined with High-Resolution Mass Spectrometry to Examine Histone Post-Translational Modifications and Histone Variants in Caenorhabditis elegans.
Millan-Ariño L; Yuan Z-F; Oomen ME; Brandenburg S; Chernobrovkin A; Salignon J; Körner L; Zubarev RA; Garcia BA; Riedel CG
Article: LEUKEMIA. 2020;34(12):3323-3337
S100A6 is a critical regulator of hematopoietic stem cells
Grahn THM; Niroula A; Vegvari A; Oburoglu L; Pertesi M; Warsi S; Safi F; Miharada N; Garcia SC; Siva K; Liu Y; Rorby E; Nilsson B; Zubarev RA; Karlsson S
Article: SCANDINAVIAN JOURNAL OF IMMUNOLOGY. 2020;92(6):e12926
IL-16 processing in sentinel node regulatory T cells is a factor in bladder cancer immunity
Krantz D; Mints M; Winerdal M; Riklund K; Rutishauser D; Zubarev R; Zirakhzadeh AA; Alamdari F; Johansson M; Sherif A; Winqvist O
Article: BLOOD. 2020;136(19):2151-2161
Lysine-specific demethylase 1A restricts ex vivo propagation of human HSCs and is a target of UM171
Subramaniam A; Zemaitis K; Talkhoncheh MS; Yudovich D; Backstrom A; Debnath S; Chen J; Jain MV; Galeev R; Gaetani M; Zubarev RA; Larsson J
Article: ADVANCED SCIENCE. 2020;7(22):2002221
Multiparametric Profiling of Engineered Nanomaterials: Unmasking the Surface Coating Effect
Gallud A; Delaval M; Kinaret P; Marwah VS; Fortino V; Ytterberg J; Zubarev R; Skoog T; Kere J; Correia M; Loeschner K; Al-Ahmady Z; Kostarelos K; Ruiz J; Astruc D; Monopoli M; Handy R; Moya S; Savolainen K; Alenius H; Greco D; Fadeel B
Article: MOLECULAR & CELLULAR PROTEOMICS. 2020;19(11):1790-1804
Slight Deuterium Enrichment in Water Acts as an Antioxidant: Is Deuterium a Cell Growth Regulator?
Zhang X; Wang J; Zubarev RA
Article: ACS INFECTIOUS DISEASES. 2020;6(10):2672-2687
A Cyclic di-GMP Network Is Present in Gram-Positive Streptococcus and Gram-Negative Proteus Species
Liu Y; Lee C; Li F; Trcek J; Bahre H; Guo R-T; Chen C-C; Chernobrovkin A; Zubarev R; Romling U
Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2020;117(40):24986-24997
Vitamin D3 receptor polymorphisms regulate T cells and T cell-dependent inflammatory diseases
Lahore GF; Raposo B; Lagerquist M; Ohlsson C; Sabatier P; Xu B; Aoun M; James J; Cai X; Zubarev RA; Nandakumar KS; Holmdahl R
Article: ANNALS OF THE RHEUMATIC DISEASES. 2020;79(9):1194-1202
Bacterial citrullinated epitopes generated by Porphyromonas gingivalis infection-a missing link for ACPA production
Jenning M; Marklein B; Ytterberg J; Zubarev RA; Joshua V; van Schaardenburg D; van de Stadt L; Catrina AI; Nonhoff U; Haupl T; Konthur Z; Burmester GR; Skriner K
Article: SCIENTIFIC REPORTS. 2020;10(1):13645
Changes in the plasma microvesicle proteome during the ovarian hyperstimulation phase of assisted reproductive technology
Olausson N; Mobarrez F; Zubarev R; Chernobrovkin A; Rutishauser D; Bremme K; Westerlund E; Hovatta O; Wallen H; Henriksson P
Journal article: EXPERIMENTAL HEMATOLOGY. 2020;88:s50
3038 – UM171 PROMOTES EX VIVO EXPANSION OF HUMAN HSCS BY TARGETING THE EPIGENETIC MODULATOR COREST FOR DEGRADATION
Subramaniam A; Zemaitis K; Talkhoncheh MS; Bäckström A; Yudovich D; Gaetani M; Zubarev R; Larsson J
Article: SCIENTIFIC REPORTS. 2020;10(1):11010
IgM antibodies against malondialdehyde and phosphorylcholine in different systemic rheumatic diseases
Thiagarajan D; Oparina N; Lundstrom S; Zubarev R; Sun J; Alarcon-Riquelme M; Frostegard J
Article: REDOX BIOLOGY. 2020;32:101491
Comprehensive chemical proteomics for target deconvolution of the redox active drug auranofin
Saei AA; Gullberg H; Sabatier P; Beusch CM; Johansson K; Lundgren B; Arvidsson PI; Arner ESJ; Zubarev RA
Article: CANCER RESEARCH. 2020;80(7):1538-1550
Thermal Proteome Profiling Identifies Oxidative-Dependent Inhibition of the Transcription of Major Oncogenes as a New Therapeutic Mechanism for Select Anticancer Compounds
Peuget S; Zhu J; Sanz G; Singh M; Gaetani M; Chen X; Shi Y; Saei AA; Visnes T; Lindstrom MS; Rihani A; Moyano-Galceran L; Carlson JW; Hjerpe E; Joneborg U; Lehti K; Hartman J; Helleday T; Zubarev R; Selivanova G
Article: ALGAL RESEARCH-BIOMASS BIOFUELS AND BIOPRODUCTS. 2020;46:101765
Nuclear proteome analysis of Chlamydomonas with response to CO₂ limitation
Arias C; Obudulu O; Zhao X; Ansolia P; Zhang X; Paul S; Bygdell J; Pirmoradian M; Zubarev RA; Samuelsson G; Wingsle G; Bajhaiya AK
Article: NATURE COMMUNICATIONS. 2020;11(1):138
DAF-16/FOXO requires Protein Phosphatase 4 to initiate transcription of stress resistance and longevity promoting genes
Sen I; Zhou X; Chernobrovkin A; Puerta-Cavanzo N; Kanno T; Salignon J; Stoehr A; Lin X-X; Baskaner B; Brandenburg S; Bjorkegren C; Zubarev RA; Riedel CG
Article: IMMUNOLOGY. 2020;159(1):96-108
Tailoring subtractive cell biopanning to identify diffuse gastric adenocarcinoma-associated antigens via human scFv antibodies
Mehdipour T; Tohidkia MR; Saei AA; Kazemi A; Khajeh S; Rahimi AAR; Nikfarjam S; Farhadi M; Halimi M; Soleimani R; Zubarev RA; Nouri M
Article: NATURE COMMUNICATIONS. 2019;10(1):5715
ProTargetMiner as a proteome signature library of anticancer molecules for functional discovery
Saei AA; Beusch CM; Chernobrovkin A; Sabatier P; Zhang B; Tokat UG; Stergiou E; Gaetani M; Vegvari A; Zubarev RA
Article: MOLECULAR & CELLULAR PROTEOMICS. 2019;18(12):2373-2387
Anticancer Effect of Deuterium Depleted Water-Redox Disbalance Leads to Oxidative Stress
Zhang X; Gaetani M; Chernobrovkin A; Zubarev RA
Article: JOURNAL OF PROTEOME RESEARCH. 2019;18(11):4027-4037
Proteome Integral Solubility Alteration: A High-Throughput Proteomics Assay for Target Deconvolution
Gaetani M; Sabatier P; Saei AA; Beusch CM; Yang Z; Lundstrom SL; Zubarev RA
Article: JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY. 2019;30(10):2178-2182
The Russian Mass Spectrometry Interest Group at ASMS: Over 20 Years of Science and Water Polo
Tsybin YO; Bondarenko PV; Artaev VB; Zubarev RA; Costello CE
Article: BIOCHIMIE. 2019;162:46-54
Repurposing of auranofin: Thioredoxin reductase remains a primary target of the drug
Zhang X; Selvaraju K; Saei AA; D'Arcy P; Zubarev RA; Arner ESJ; Linder S
Article: APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 2019;85(13):e00671-e00619
Posttranslational Targeting of a Recombinant Protein Promotes Its Efficient Secretion into the Escherichia coli Periplasm
Ytterberg AJ; Zubarev RA; Baumgarten T
Article: OXIDATIVE MEDICINE AND CELLULAR LONGEVITY. 2019;2019:1659468-11
Oxidative Stress Induced by the Deubiquitinase Inhibitor b-AP15 Is Associated with Mitochondrial Impairment
Zhang X; Espinosa B; Saei AA; D'Arcy P; Zubarev RA; Linder S
Journal article: HEMASPHERE. 2019;3(S1):1066
PB2398 DIFFERENTIAL PHARMACO‐PROTEOMIC ANALYSIS OF PLASMA FROM β‐THALASSEMIA IN RESPONSE TO HYDROXYUREA TREATMENT
Zohaib M; Ansari S; Shamsi T; Zubarev R; Zarina S
Article: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 2019;20(9):E2157-2157
SpotLight ProteomicsA IgG-Enrichment Phenotype Profiling Approach with Clinical Implications
Lundstrom SL; Heyder T; Wiklundh E; Zhang B; Eklund A; Grunewald J; Zubarev RA
Article: CANCER LETTERS. 2019;448:70-83
Proteasome inhibitor b-AP15 induces enhanced proteotoxicity by inhibiting cytoprotective aggresome formation
Hillert E-K; Brnjic S; Zhang X; Mazurkiewicz M; Saei AA; Mofers A; Selvaraj K; Zubarev R; Linder S; D'Arcy P
Article: SCIENTIFIC REPORTS. 2019;9(1):4366
Cationic gold nanoparticles elicit mitochondrial dysfunction: a multi-omics study
Gallud A; Kloditz K; Ytterberg J; Ostberg N; Katayama S; Skoog T; Gogvadze V; Chen Y-Z; Xue D; Moya S; Ruiz J; Astruc D; Zubarev R; Kere J; Fadeel B
Article: ARTHRITIS & RHEUMATOLOGY. 2019;71(2):210-221
Structural Basis of Cross-Reactivity of Anti-Citrullinated Protein Antibodies
Ge C; Xu B; Liang B; Lonnblom E; Lundstrom SL; Zubarev RA; Ayoglu B; Nilsson P; Skogh T; Kastbom A; Malmstrom V; Klareskog L; Toes REM; Rispens T; Dobritzsch D; Holmdahl R
Journal article: BIOCHEMISTRY-MOSCOW. 2019;84(2):252-260
ПРОТЕОМ ГОЛОВНОГО МОЗГА Drosophila melanogaster: ОБОГАЩЕНИЕ ЯДЕРНЫМИ БЕЛКАМИ
Кузнецова КГ; Иванов МВ; Пятницкий МА; Левицкий ЛИ; Ильина ИЮ; Чернобровкин АЛ; Зубарев РА; Горшков МВ; Мошковский СА
Article: JOURNAL OF CLINICAL PHARMACOLOGY. 2019;59(1):98-106
Pharmacoproteomics Profiling of Plasma From β-Thalassemia Patients in Response to Hydroxyurea Treatment
Zohaib M; Ansari SH; Shamsi TS; Zubarev RA; Zarina S
Article: BIOCHEMISTRY-MOSCOW. 2019;84(1):71-78
Brain Proteome of Drosophila melanogaster Is Enriched with Nuclear Proteins
Kuznetsova KG; Ivanov MV; Pyatnitskiy MA; Levitsky LI; Ilina IY; Chernobrovkin AL; Zubarev RA; Gorhskov MV; Moshkovskii SA
Article: INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. 2018;20(1):E7-7
Proteomic Analysis of Mouse Brain Subjected to Spaceflight
Mao XW; Sandberg LB; Gridley DS; Herrmann EC; Zhang G; Raghavan R; Zubarev RA; Zhang B; Stodieck LS; Ferguson VL; Bateman TA; Pecaut MJ
Article: SCIENTIFIC REPORTS. 2018;8(1):17958
Patients with anti-Jo1 antibodies display a characteristic IgG Fc-glycan profile which is further enhanced in anti-Jo1 autoantibodies
Fernandes-Cerqueira C; Renard N; Notarnicola A; Wigren E; Graslund S; Zubarev RA; Lundberg IE; Lundstrom SL
Article: JOURNAL OF PROTEOME RESEARCH. 2018;17(12):4072-4084
Biology/Disease-Driven Initiative on Protein-Aggregation Diseases of the Human Proteome Project: Goals and Progress to Date
Boersema PJ; Melnik A; Hazenberg BPC; Rezeli M; Marko-Varga G; Kamiie J; Portelius E; Blennow K; Zubarev RA; Polymenidou M; Picotti P
Article: PROTEOMICS. 2018;18(24):e1800118
Dynamic Proteomics Reveals High Plasticity of Cellular Proteome: Growth-Related and Drug-Induced Changes in Cancer Cells are Comparable
Sabatier P; Saei AA; Wang S; Zubarev RA
Article: SCIENCE. 2018;362(6416):834-839
Small-molecule inhibitor of OGG1 suppresses proinflammatory gene expression and inflammation
Visnes T; Cazares-Korner A; Hao W; Wallner O; Masuyer G; Loseva O; Mortusewicz O; Wiita E; Sarno A; Manoilov A; Astorga-Wells J; Jemth A-S; Pan L; Sanjiv K; Karsten S; Gokturk C; Grube M; Homan EJ; Hanna BMF; Paulin CBJ; Pham T; Rasti A; Berglund UW; von Nicolai C; Benitez-Buelga C; Koolmeister T; Ivanic D; Iliev P; Scobie M; Krokan HE; Baranczewski P; Artursson P; Altun M; Jensen AJ; Kalderen C; Ba X; Zubarev RA; Stenmark P; Boldogh I; Helleday T
Article: SCIENTIFIC REPORTS. 2018;8(1):16249
Isotopic resonance at 370 ppm deuterium negatively affects kinetics of luciferin oxidation by luciferase
Rodin S; Rebellato P; Lundin A; Zubarev RA
Article: JOURNAL OF PROTEOME RESEARCH. 2018;17(11):3889-3903
Proteogenomics of Adenosine-to-Inosine RNA Editing in the Fruit Fly
Kuznetsova KG; Kliuchnikova AA; Ilina IU; Chernobrovkin AL; Novikova SE; Farafonova TE; Karpov DS; Ivanov MV; Goncharov AO; Ilgisonis EV; Voronko OE; Nasaev SS; Zgoda VG; Zubarev RA; Gorshkov MV; Moshkovskii SA
Article: JOURNAL OF PHARMACEUTICAL AND BIOMEDICAL ANALYSIS. 2018;160:80-88
STAT3 differential scanning fluorimetry and differential scanning light scattering assays: Addressing a missing link in the characterization of STAT3 inhibitor interactions
Desroses M; Busker S; Astorga-Wells J; Attarha S; Kolosenko I; Zubarev RA; Helleday T; Grander D; Page BDG
Article: BIOCHEMICAL PHARMACOLOGY. 2018;156:291-301
The deubiquitinase inhibitor b-AP15 induces strong proteotoxic stress and Check for mitochondrial damage
Zhang X; Pellegrini P; Saei AA; Hillert E-K; Mazurkiewicz M; Olofsson MH; Zubarev RA; D'Arcy P; Linder S
Article: ERJ OPEN RESEARCH. 2018;4(3):33-2018
Altered Fc galactosylation in IgG4 is a potential serum marker for chronic lung disease
Heyder T; Wiklundh E; Eklund A; James A; Dahlen S-E; Grunewald J; Zubarev RA; Lundström SL
Article: APPLIED AND ENVIRONMENTAL MICROBIOLOGY. 2018;84(12):e00270-e00218
Optimizing Recombinant Protein Production in the Escherichia coli Periplasm Alleviates Stress
Baumgarten T; Ytterberg AJ; Zubarev RA; de Gier J-W
Article: EUROPEAN JOURNAL OF IMMUNOLOGY. 2018;48(6):1030-1045
Variable domain N-linked glycosylation and negative surface charge are key features of monoclonal ACPA: Implications for B-cell selection
Lloyd KA; Steen J; Amara K; Titcombe PJ; Israelsson L; Lundstrom SL; Zhou D; Zubarev RA; Reed E; Piccoli L; Gabay C; Lanzavecchia A; Baeten D; Lundberg K; Mueller DL; Klareskog L; Malmstrom V; Gronwall C
Article: MOLECULAR & CELLULAR PROTEOMICS. 2018;17(6):1144-1155
Comparative Proteomics of Dying and Surviving Cancer Cells Improves the Identification of Drug Targets and Sheds Light on Cell Life/Death Decisions
Saei AA; Sabatier P; Tokat UG; Chernobrovkin A; Pirmoradian M; Zubarev RA
Article: JOURNAL OF PROTEOME RESEARCH. 2018;17(5):1801-1811
Proteogenomics of Malignant Melanoma Cell Lines: The Effect of Stringency of Exome Data Filtering on Variant Peptide Identification in Shotgun Proteomics
Lobas AA; Pyatnitskiy MA; Chernobrovkin AL; Ilina IY; Karpov DS; Solovyeva EM; Kuznetsova KG; Ivanov MV; Lyssuk EY; Kliuchnikova AA; Voronko OE; Larin SS; Zubarev RA; Gorshkov MV; Moshkovskii SA
Article: JOURNAL OF MOLECULAR RECOGNITION. 2018;31(4)
Identification and characterization of antibodies elicited by human cystatin C fragment
Behrendt I; Pradzinska M; Spodzieja M; Czaplewska P; Kolodziejczyk AS; Szymanska A; Kasprzykowski F; Lundstrom SL; Zubarev RA; Rodziewicz-Motowidlo S
Article: JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. 2018;140(2):531-533
Size-Dependent Hydrogen Atom Attachment to Gas-Phase Hydrogen-Deficient Polypeptide Radical Cations
Di Stefano LH; Papanastasiou D; Zubarev RA
Article: NUCLEIC ACIDS RESEARCH. 2018;46(D1):D1237-D1247
The SysteMHC Atlas project
Shao W; Pedrioli PGA; Wolski W; Scurtescu C; Schmid E; Vizcaino JA; Courcelles M; Schuster H; Kowalewski D; Marino F; Arlehamn CSL; Vaughan K; Peters B; Sette A; Ottenhoff THM; Meijgaarden KE; Nieuwenhuizen N; Kaufmann SHE; Schlapbach R; Castle JC; Nesvizhskii AI; Nielsen M; Deutsch EW; Campbell DS; Moritz RL; Zubarev RA; Ytterberg AJ; Purcell AW; Marcilla M; Paradela A; Wang Q; Costello CE; Ternette N; van Veelen PA; van Els CACM; Heck AJR; de Souza GA; Sollid LM; Admon A; Stevanovic S; Rammensee H-G; Thibault P; Perreault C; Bassani-Sternberg M; Aebersold R; Caron E
Article: FRONTIERS IN IMMUNOLOGY. 2018;9:1623
Streptococcal Endo-β-N-Acetylglucosaminidase Suppresses Antibody-Mediated Inflammation In Vivo
Nandakumar KS; Collin M; Happonen KE; Lundstrom SL; Croxford AM; Xu B; Zubarev RA; Rowley MJ; Blom AM; Kjellmans C; Holmdahl R
Article: ATHEROSCLEROSIS. 2018;268:36-48
IgM antibodies against phosphorylcholine promote polarization of T regulatory cells from patients with atherosclerotic plaques, systemic lupus erythematosus and healthy donors
Sun J; Lundstrom SL; Zhang B; Zubarev RA; Steuer J; Gillgren P; Rahman M; Ajeganova S; Liu A; Frostegard J
Article: JOURNAL OF IMMUNOLOGY RESEARCH. 2018;2018:3982942-15
Proteomic Identification of Heat Shock-Induced Danger Signals in a Melanoma Cell Lysate Used in Dendritic Cell-Based Cancer Immunotherapy
Gonzalez FE; Chernobrovkin A; Pereda C; Garcia-Salum T; Tittarelli A; Lopez MN; Salazar-Onfray F; Zubarev RA
Article: JOURNAL OF AUTOIMMUNITY. 2017;84:29-45
Autoreactivity to malondialdehyde-modifications in rheumatoid arthritis is linked to disease activity and synovial pathogenesis
Gronwall C; Amara K; Hardt U; Krishnamurthy A; Steen J; Engstrom M; Sun M; Ytterberg AJ; Zubarev RA; Scheel-Toellner D; Greenberg JD; Klareskog L; Catrina AI; Malmstrom V; Silverman GJ
Article: ARTHRITIS RESEARCH & THERAPY. 2017;19(1):182
IgG Fc galactosylation predicts response to methotrexate in early rheumatoid arthritis
Lundstrom SL; Hensvold AH; Rutishauser D; Klareskog L; Ytterberg AJ; Zubarev RA; Catrina AI
Article: DISCOVERIES (CRAIOVA). 2017;5(1):e72
Self-assembly of Deinococcus radiodurans supports nanocell scenario of life origin.
Bernadotte A; Semenova V; Musial VAM; Kasprzykowska A; Zubarev RA
Article: SCIENTIFIC REPORTS. 2017;7(1):1590
Expression proteomics study to determine metallodrug targets and optimal drug combinations
Lee RFS; Chernobrovkin A; Rutishauser D; Allardyce CS; Hacker D; Johnsson K; Zubarev RA; Dyson PJ
Article: MOLECULAR & CELLULAR PROTEOMICS. 2017;16(5):936-948
Covariation of Peptide Abundances Accurately Reflects Protein Concentration Differences
Zhang B; Pirmoradian M; Zubarev R; Kall L
Journal article: THROMBOSIS RESEARCH. 2017;151:s131
P-070: The microparticle proteome in IVF – changes during the oestrogen surge of controlled ovarian hyperstimulation
Olausson N; Henriksson P; Zubarev R; Hovatta O; Westerlund E; Wallen H; Mobarrez F
Article: SCIENTIFIC REPORTS. 2017;7:41929
SpotLight Proteomics: uncovering the hidden blood proteome improves diagnostic power of proteomics
Lundstrom SL; Zhang B; Rutishauser D; Aarsland D; Zubarev RA
Article: JOURNAL OF PROTEOME RESEARCH. 2017;16(2):689-697
Cytotoxic and Proinflammatory Effects of Metal-Based Nanoparticles on THP-1 Monocytes Characterized by Combined Proteomics Approaches
Tarasova NK; Gallud A; Ytterberg AJ; Chernobrovkin A; Aranzaes JR; Astruc D; Antipov A; Fedutik Y; Fadeel B; Zubarev RA
Article: PLOS ONE. 2017;12(1):e0169296
On the Effect of Planetary Stable Isotope Compositions on Growth and Survival of Terrestrial Organisms
Xie X; Zubarev RA
Article: JOURNAL OF THE AMERICAN HEART ASSOCIATION. 2016;5(12):e004415
Human IgM Antibodies to Malondialdehyde Conjugated With Albumin Are Negatively Associated With Cardiovascular Disease Among 60-Year-Olds
Thiagarajan D; Frostegard AG; Singh S; Rahman M; Liu A; Vikstrom M; Leander K; Gigante B; Hellenius M-L; Zhang B; Zubarev RA; de Faire U; Lundstrom SL; Frostegard J
Article: DISCOVERIES (CRAIOVA). 2016;4(4):e67
Isoelectric point region pI≈7.4 as a treasure island of abnormal proteoforms in blood.
Pirmoradian M; Aarsland D; Zubarev RA
Article: ANNALS OF ONCOLOGY. 2016;27(12):2275-2283
Validation and development of MTH1 inhibitors for treatment of cancer
Berglund UW; Sanjiv K; Gad H; Kalderen C; Koolmeister T; Pham T; Gokturk C; Jafari R; Maddalo G; Seashore-Ludlow B; Chernobrovkin A; Manoilov A; Pateras IS; Rasti A; Jemth A-S; Almlof I; Loseva O; Visnes T; Einarsdottir BO; Gaugaz FZ; Saleh A; Platzack B; Wallner OA; Vallin KSA; Henriksson M; Wakchaure P; Borhade S; Herr P; Kallberg Y; Baranczewski P; Homan EJ; Wiita E; Nagpal V; Meijer T; Schipper N; Rudd SG; Brautigam L; Lindqvist A; Filppula A; Lee T-C; Artursson P; Nilsson JA; Gorgoulis VG; Lehtio J; Zubarev RA; Scobie M; Helleday T
Article: AMINO ACIDS. 2016;48(12):2809-2820
Application of amide hydrogen/deuterium exchange mass spectrometry for epitope mapping in human cystatin C
Pradzinska M; Behrendt I; Astorga-Wells J; Manoilov A; Zubarev RA; Kolodziejczyk AS; Rodziewicz-Motowidlo S; Czaplewska P
Article: AMINO ACIDS. 2016;48(11):2501-2518
Isolation and characterization of autoantibodies against human cystatin C
Pradzinska M; Behrendt I; Spodzieja M; Kolodziejczyk AS; Rodziewicz-Motowidlo S; Szymanska A; Lundstrom SL; Zubarev RA; Macur K; Czaplewska P
Article: MOLECULAR & CELLULAR PROTEOMICS. 2016;15(9):3017-3029
Approach for Identifying Human Leukocyte Antigen (HLA)-DR Bound Peptides from Scarce Clinical Samples
Heyder T; Kohler M; Tarasova NK; Haag S; Rutishauser D; Rivera NV; Sandin C; Mia S; Malmstrom V; Wheelock AM; Wahlstrom J; Holmdahl R; Eklund A; Zubarev RA; Grunewald J; Ytterberg AJ
Article: JOURNAL OF BIOLOGICAL CHEMISTRY. 2016;291(35):18410-18418
Phosphorylation of Leukotriene C₄ Synthase at Serine 36 Impairs Catalytic Activity
Ahmad S; Ytterberg AJ; Thulasingam M; Tholander F; Bergman T; Zubarev R; Wetterholm A; Rinaldo-Matthis A; Haeggstrom JZ
Article: JOURNAL OF PROTEOME RESEARCH. 2016;15(7):2337-2345
Establishing a Proteomics-Based Monocyte Assay To Assess Differential Innate Immune Activation Responses
Tarasova NK; Ytterberg AJ; Lundberg K; Zhang X-M; Harris RA; Zubarev RA
Article: MOLECULAR & CELLULAR PROTEOMICS. 2016;15(4):1467-1478
DeMix-Q: Quantification-Centered Data Processing Workflow
Zhang B; Kall L; Zubarev RA
Article: FRONTIERS IN IMMUNOLOGY. 2016;7:494
Functional and Structural Characterization of a Novel HLA-DRB1*04:01-Restricted α-Enolase T Cell Epitope in Rheumatoid Arthritis
Gerstner C; Dubnovitsky A; Sandin C; Kozhukh G; Uchtenhagen H; James EA; Ronnelid J; Ytterberg AJ; Pieper J; Reed E; Tandre C; Rieck M; Zubarev RA; Ronnblom L; Sandalova T; Buckner JH; Achour A; Malmstrom V
Article: CELL DEATH DISCOVERY. 2016;2:16068
How well can morphology assess cell death modality. A proteomics study
Chernobrovkin AL; Zubarev RA
Article: JOURNAL OF PROTEOME RESEARCH. 2015;14(12):5283-5290
Subset of Kappa and Lambda Germline Sequences Result in Light Chains with a Higher Molecular Mass Phenotype
Barnidge DR; Lundstrom SL; Zhang B; Dasari S; Murray DL; Zubarev RA
Article: JOURNAL OF CLINICAL INVESTIGATION. 2015;125(12):4612-4624
Development of autoantibodies against muscle-specific FHL1 in severe inflammatory myopathies
Albrecht I; Wick C; Hallgren A; Tjarnlund A; Nagaraju K; Andrade F; Thompson K; Coley W; Phadke A; Diaz-Gallo L-M; Bottai M; Nennesmo I; Chemin K; Herrath J; Johansson K; Wikberg A; Ytterberg AJ; Zubarev RA; Danielsson O; Krystufkova O; Vencovsky J; Landegren N; Wahren-Herlenius M; Padyukov L; Kampe O; Lundberg IE
Article: ANALYTICAL CHEMISTRY. 2015;87(23):11840-11846
Multijunction Capillary Isoelectric Focusing Device Combined with Online Membrane-Assisted Buffer Exchanger Enables Isoelectric Point Fractionation of Intact Human Plasma Proteins for Biomarker Discovery
Pirmoradian M; Astorga-Wells J; Zubarev RA
Article: ARTHRITIS & RHEUMATOLOGY. 2015;67(12):3135-3145
Release of Active Peptidyl Arginine Deiminases by Neutrophils Can Explain Production of Extracellular Citrullinated Autoantigens in Rheumatoid Arthritis Synovial Fluid
Spengler J; Lugonja B; Ytterberg AJ; Zubarev RA; Creese AJ; Pearson MJ; Grant MM; Milward M; Lundberg K; Buckley CD; Filer A; Raza K; Cooper PR; Chapple IL; Scheel-Toellner D
Article: JOURNAL OF PROTEOME RESEARCH. 2015;14(10):4179-4193
Limited Proteolysis Combined with Stable Isotope Labeling Reveals Conformational Changes in Protein (Pseudo)kinases upon Binding Small Molecules
Di Michele M; Stes E; Vandermarliere E; Arora R; Astorga-Wells J; Vandenbussche J; van Heerde E; Zubarev R; Bonnet P; Linders JTM; Jacoby E; Brehmer D; Martens L; Gevaert K
Article: SCIENTIFIC REPORTS. 2015;5:14338
Primordial soup was edible: abiotically produced Miller-Urey mixture supports bacterial growth
Xie X; Backman D; Lebedev AT; Artaev VB; Jiang L; Ilag LL; Zubarev RA
Article: JOURNAL OF PROTEOME RESEARCH. 2015;14(9):3940-3947
Proteomics Reveals a Role for Attachment in Monocyte Differentiation into Efficient Proinflammatory Macrophages
Tarasova NK; Ytterberg AJ; Lundberg K; Zhang X-M; Harris RA; Zubarev RA
Article: PLANT SCIENCE. 2015;238:323-329
Novel proline-hydroxyproline glycopeptides from the dandelion (Taraxacum officinale Wigg.) flowers: de novo sequencing and biological activity
Astafieva AA; Enyenihi AA; Rogozhin EA; Kozlov SA; Grishin EV; Odintsova TI; Zubarev RA; Egorov TA
Article: ANNALS OF THE RHEUMATIC DISEASES. 2015;74(9):1772-1777
Shared immunological targets in the lungs and joints of patients with rheumatoid arthritis: identification and validation
Ytterberg AJ; Joshua V; Reynisdottir G; Tarasova NK; Rutishauser D; Ossipova E; Hensvold AH; Eklund A; Skold CM; Grunewald J; Malmstrom V; Jakobsson PJ; Ronnelid J; Padyukov L; Zubarev RA; Klareskog L; Catrina AI
Article: ONCOTARGET. 2015;6(25):21740-21754
Molecular profiling of prostate cancer derived exosomes may reveal a predictive signature for response to docetaxel
Kharaziha P; Chioureas D; Rutishauser D; Baltatzis G; Lennartsson L; Fonseca P; Azimi A; Hultenby K; Zubarev R; Ullen A; Yachnin J; Nilsson S; Panaretakis T
Article: DISCOVERIES (CRAIOVA). 2015;3(3):e50
An updated h-index measures both the primary and total scientific output of a researcher.
Bucur O; Almasan A; Zubarev R; Friedman M; Nicolson GL; Sumazin P; Leabu M; Nikolajczyk BS; Avram D; Kunej T; Calin GA; Godwin AK; Adami H-O; Zaphiropoulos PG; Richardson DR; Schmitt-Ulms G; Westerblad H; Keniry M; Grau GER; Carbonetto S; Stan RV; Popa-Wagner A; Takhar K; Baron BW; Galardy PJ; Yang F; Data D; Fadare O; Yeo KJ; Gabreanu GR; Andrei S; Soare GR; Nelson MA; Liehn EA
Article: SCIENTIFIC REPORTS. 2015;5:11176
Functional Identification of Target by Expression Proteomics (FITExP) reveals protein targets and highlights mechanisms of action of small molecule drugs
Chernobrovkin A; Marin-Vicente C; Visa N; Zubarev RA
Article: INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY. 2015;61:34-45
Effect of host plant and immune challenge on the levels of chemosensory and odorant-binding proteins in caterpillar salivary glands
Celorio-Mancera MDLP; Ytterberg AJ; Rutishauser D; Janz N; Zubarev RA
Article: IRANIAN JOURNAL OF KIDNEY DISEASES. 2015;9(3):239-248
Diagnostic Urinary Proteome Profile for Immunoglobulin A Nephropathy
Samavat S; Kalantari S; Nafar M; Rutishauser D; Rezaei-Tavirani M; Parvin M; Zubarev RA
Article: SCIENTIFIC REPORTS. 2015;5:9215
Isotopic Resonance Hypothesis: Experimental Verification by Escherichia coli Growth Measurements
Xie X; Zubarev RA
Article: RAPID COMMUNICATIONS IN MASS SPECTROMETRY. 2014;28(23):2595-2604
Mass spectrometric de novo sequencing of natural non-tryptic peptides: comparing peculiarities of collision-induced dissociation (CID) and high energy collision dissociation (HCD)
Samgina TY; Vorontsov EA; Gorshkov VA; Artemenko KA; Zubarev RA; Lebedev AT
Journal article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2014;111(44):15851
Dominant suppression of inflammation by glycan-hydrolyzed IgG (Retraction of vol 110, pg 10252, 2013)
Nandakumar KS; Collin M; Happonen KE; Croxford AM; Lundstrm SL; Zubarev RA; Rowley MJ; Blom AM; Holmdahl R
Article: MOLECULAR & CELLULAR PROTEOMICS. 2014;13(11):3211-3223
DeMix Workflow for Efficient Identification of Cofragmented Peptides in High Resolution Data-dependent Tandem Mass Spectrometry
Zhang B; Pirmoradian M; Chernobrovkin A; Zubarev RA
Article: BMC NEPHROLOGY. 2014;15:141
Predictive urinary biomarkers for steroid-resistant and steroid-sensitive focal segmental glomerulosclerosis using high resolution mass spectrometry and multivariate statistical analysis
Kalantari S; Nafar M; Rutishauser D; Samavat S; Rezaei-Tavirani M; Yang H; Zubarev RA
Article: ANALYTICAL CHEMISTRY. 2014;86(12):5728-5732
Membrane-Assisted lsoelectric Focusing Device As a Micropreparative Fractionator for Two-Dimensional Shotgun Proteomics
Pirmoradian M; Zhang B; Chingin K; Astorga-Wells J; Zubarev RA
Article: JOURNAL OF ALZHEIMERS DISEASE. 2014;40(3):659-666
Prognostic Polypeptide Blood Plasma Biomarkers of Alzheimer's Disease Progression
Yang H; Lyutvinskiy Y; Herukka S-K; Soininen H; Rutishauser D; Zubarev RA
Article: BIOTECHNOLOGY AND BIOENGINEERING. 2014;111(4):748-760
Cell Line Profiling to Improve Monoclonal Antibody Production
Kang S; Ren D; Xiao G; Daris K; Buck L; Enyenihi AA; Zubarev R; Bondarenko PV; Deshpande R
Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2014;111(11):4227-4232
Binding of Pro-Gly-Pro at the active site of leukotriene A₄ hydrolase/aminopeptidase and development of an epoxide hydrolase selective inhibitor
Stsiapanava A; Olsson U; Wan M; Kleinschmidt T; Rutishauser D; Zubarev RA; Samuelsson B; Rinaldo-Matthis A; Haeggstrom JZ
Article: NEPHRO-UROLOGY MONTHLY. 2014;6(2):e16806
Urinary prognostic biomarkers in patients with focal segmental glomerulosclerosis.
Kalantari S; Nafar M; Samavat S; Rezaei-Tavirani M; Rutishauser D; Zubarev R
Article: PLOS GENETICS. 2014;10(2):e1004151
Natural Polymorphisms in Tap2 Influence Negative Selection and CD4:CD8 Lineage Commitment in the Rat
Tuncel J; Haag S; Yau ACY; Norin U; Baud A; Lonnblom E; Maratou K; Ytterberg AJ; Ekman D; Thordardottir S; Johannesson M; Gillett A; Stridh P; Jagodic M; Olsson T; Fernandez-Teruel A; Zubarev RA; Mott R; Aitman TJ; Flint J; Holmdahl R
Article: ANALYTICAL CHEMISTRY. 2014;86(1):372-379
Fragmentation of Positively-Charged Biological Ions Activated with a Beam of High-Energy Cations
Chingin K; Makarov A; Denisov E; Rebrov O; Zubarev RA
Article: INTERNATIONAL JOURNAL OF NEPHROLOGY. 2014;2014:574261-10
The Novel Diagnostic Biomarkers for Focal Segmental Glomerulosclerosis
Nafar M; Kalantari S; Samavat S; Rezaei-Tavirani M; Rutishuser D; Zubarev RA
Article: ALLERGY. 2014;69(1):104-112
Protein biomarkers in vernix with potential to predict the development of atopic eczema in early childhood
Holm T; Rutishauser D; Kai-Larsen Y; Lyutvinskiy Y; Stenius F; Zubarev RA; Agerberth B; Alm J; Scheynius A
Article: PLOS ONE. 2014;9(11):e113924
IgG Antibodies to Cyclic Citrullinated Peptides Exhibit Profiles Specific in Terms of IgG Subclasses, Fc-Glycans and a Fab-Peptide Sequence
Lundstrom SL; Fernandes-Cerqueira C; Ytterberg AJ; Ossipova E; Hensvold AH; Jakobsson P-J; Malmstrom V; Catrina AI; Klareskog L; Lundberg K; Zubarev RA
Article: PLOS ONE. 2014;9(7):e102071
Effects of Low-Level Deuterium Enrichment on Bacterial Growth
Xie X; Zubarev RA
Article: ANNALS OF THE RHEUMATIC DISEASES. 2014;73(1):263-269
Heightened immune response to autocitrullinated Porphyromonas gingivalis peptidylarginine deiminase: a potential mechanism for breaching immunologic tolerance in rheumatoid arthritis
Quirke A-M; Lugli EB; Wegner N; Hamilton BC; Charles P; Chowdhury M; Ytterberg AJ; Zubarev RA; Potempa J; Culshaw S; Guo Y; Fisher BA; Thiele G; Mikuls TR; Venables PJW
Article: PLOS ONE. 2014;9(3):e91433
Detection of Viral Proteins in Human Cells Lines by Xeno-Proteomics: Elimination of the Last Valid Excuse for Not Testing Every Cellular Proteome Dataset for Viral Proteins
Chernobrovkin AL; Zubarev RA
Article: ACTA CRYSTALLOGRAPHICA SECTION D: BIOLOGICAL CRYSTALLOGRAPHY. 2013;69(Pt 12):2563-2579
Structural basis of SUFU-GLI interaction in human Hedgehog signalling regulation
Cherry AL; Finta C; Karlstrom M; Jin Q; Schwend T; Astorga-Wells J; Zubarev RA; Del Campo M; Criswell AR; de Sanctis D; Jovine L; Toftgard R
Article: JOURNAL OF ALZHEIMERS DISEASE. 2013;38(3):567-579
Blood Plasma IgG Fc Glycans are Significantly Altered in Alzheimer's Disease and Progressive Mild Cognitive Impairment
Lundstrom SL; Yang H; Lyutvinskiy Y; Rutishauser D; Herukka S-K; Soininen H; Zubarev RA
Article: MOLECULAR & CELLULAR PROTEOMICS. 2013;12(11):3330-3338
Rapid and Deep Human Proteome Analysis by Single-dimension Shotgun Proteomics
Pirmoradian M; Budamgunta H; Chingin K; Zhang B; Astorga-Wells J; Zubarev RA
Journal article: NATURE METHODS. 2013;10(11):i-ii
Trypsin/Lys-C protease mix for enhanced protein mass spectrometry analysis
Saveliev S; Bratz M; Zubarev R; Szapacs M; Budamgunta H; Urh M
Article: JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY. 2013;24(11):1671-1675
N-Terminal Peptide Sequence Repetition Influences the Kinetics of Backbone Fragmentation: A Manifestation of the Jahn-Teller Effect?
Good DM; Yang H; Zubarev RA
Article: JOURNAL OF PROTEOME RESEARCH. 2013;12(10):4566-4576
Brain Proteomics Supports the Role of Glutamate Metabolism and Suggests Other Metabolic Alterations in Protein L-Isoaspartyl Methyltransferase (PIMT)-Knockout Mice
Yang H; Lowenson JD; Clarke S; Zubarev RA
Article: JOURNAL OF ALZHEIMERS DISEASE. 2013;37(2):297-308
Shotgun Brain Proteomics Reveals Early Molecular Signature in Presymptomatic Mouse Model of Alzheimer's Disease
Yang H; Wittnam JL; Zubarev RA; Bayer TA
Article: GENOMICS PROTEOMICS & BIOINFORMATICS. 2013;11(4):219-229
In silico proteome-wide amino aCid and elemental composition (PACE) analysis of expression proteomics data provides a fingerprint of dominant metabolic processes.
Good DM; Mamdoh A; Budamgunta H; Zubarev RA
Article: MOLECULAR & CELLULAR PROTEOMICS. 2013;12(8):2324-2331
In Silico Instrumental Response Correction Improves Precision of Label-free Proteomics and Accuracy of Proteomics-based Predictive Models
Lyutvinskiy Y; Yang H; Rutishauser D; Zubarev RA
Article: ANNALS OF THE RHEUMATIC DISEASES. 2013;72(7):1225-1232
C57BL/6 mice need MHC class II Aq to develop collagen-induced arthritis dependent on autoreactive T cells
Backlund J; Li C; Jansson E; Carlsen S; Merky P; Nandakumar K-S; Haag S; Ytterberg J; Zubarev RA; Holmdahl R
Article: JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY. 2013;24(7):1037-1044
Collision-Induced Dissociation Fragmentation Inside Disulfide C-Terminal Loops of Natural Non-Tryptic Peptides
Samgina TY; Vorontsov EA; Gorshkov VA; Artemenko KA; Zubarev RA; Ytterberg JA; Lebedev AT
Journal article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2013;110(25):10252-10257
Dominant suppression of inflammation by glycan-hydrolyzed IgG (Retracted article. See vol. 111, pg. 15851, 2014)
Nandakumar KS; Collin M; Happonen KE; Croxford AM; Lundstrom SL; Zubarev RA; Rowley MJ; Blom AM; Holmdahl R
Article: ANALYTICAL CHEMISTRY. 2013;85(11):5288-5296
Orbitrap Mass Spectrometry
Zubarev RA; Makarov A
Journal article: CANCER RESEARCH. 2013;73(8_Supplement):3210
Abstract 3210: Proteomic study of 5-fluorouracil resistance in colon cancer cell lines.
Guerrero-Valero M; Marin-Vicente C; Zubarev RA; Visa N
Article: INTERFACE FOCUS. 2013;3(2):20120072
The PredictAD project: development of novel biomarkers and analysis software for early diagnosis of the Alzheimer's disease
Antila K; Lotjonen J; Thurfjell L; Laine J; Massimini M; Rueckert D; Zubarev RA; Oresic M; van Gils M; Mattila J; Simonsen AH; Waldemar G; Soininen H
Article: JOURNAL OF PROTEOME RESEARCH. 2013;12(4):1969-1979
The Effects of 5-Fluorouracil on the Proteome of Colon Cancer Cells
Marin-Vicente C; Lyutvinskiy Y; Fuertes PR; Zubarev RA; Visa N
Article: MICROBIAL CELL FACTORIES. 2013;12:24
Optimizing heterologous protein production in the periplasm of E. coli by regulating gene expression levels
Schlegel S; Rujas E; Ytterberg AJ; Zubarev RA; Luirink J; de Gier J-W
Journal article: NATURE METHODS. 2013;10(3):186-187
Proteoform: a single term describing protein complexity
Smith LM; Kelleher NL
Article: PROTEOMICS. 2013;13(5):723-726
The challenge of the proteome dynamic range and its implications for in-depth proteomics
Zubarev RA
Article: PLOS ONE. 2013;8(12):e80830
Urinary Prognostic Biomarkers and Classification of IgA Nephropathy by High Resolution Mass Spectrometry Coupled with Liquid Chromatography
Kalantari S; Rutishauser D; Samavat S; Nafar M; Mahmudieh L; Rezaei-Tavirani M; Zubarev RA
Article: JOURNAL OF PROTEOME RESEARCH. 2012;11(12):6213-6222
Composition and Antimicrobial Activity of the Skin Peptidome of Russian Brown Frog Rana temporaria
Samgina TY; Vorontsov EA; Gorshkov VA; Hakalehto E; Hanninen O; Zubarev RA; Lebedev AT
Article: INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY. 2012;42(10):796-805
Chemosensory proteins, major salivary factors in caterpillar mandibular glands
Celorio-Mancera MDLP; Sundmalm SM; Vogel H; Rutishauser D; Ytterberg AJ; Zubarev RA; Janz N
Article: ANALYTICAL CHEMISTRY. 2012;84(15):6856-6862
Separation of Polypeptides by Isoelectric Point Focusing in Electrospray-Friendly Solution Using a Multiple-Junction Capillary Fractionator
Chingin K; Astorga-Wells J; Najafabadi MP; Lavold T; Zubarev RA
Article: JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY. 2012;23(8):1319-1325
Carbonyl Charge Solvation Patterns May Relate to Fragmentation Classes in Collision-Activated Dissociation
Yang H; Good DM; van der Spoel D; Zubarev RA
Article: JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY. 2012;23(6):1015-1018
Radical a-Ions in Electron Capture Dissociation: On the Origin of Species
Zubarev RA; Good DM; Savitski MM
Article: PEPTIDES. 2012;34(2):296-302
LC-MS/MS with 2D mass mapping of skin secretions' peptides as a reliable tool for interspecies identification inside Rana esculenta complex
Samgina TY; Gorshkov VA; Artemenko KA; Vorontsov EA; Klykov OV; Ogourtsov SV; Zubarev RA; Lebedev AT
Article: ACS COMBINATORIAL SCIENCE. 2012;14(3):145-149
Introducing an Asp-Pro Linker in the Synthesis of Random One-Bead-One-Compound Hexapeptide Libraries Compatible with ESI-MS Analysis
Masforrol Y; Gil J; Javier Gonzalez L; Perez-Riverol Y; Fernandez-de-Cossio J; Sanchez A; Hiram Betancourt L; Elisa Garay H; Cabrales A; Albericio F; Yang H; Zubarev RA; Besada V; Reyes Acosta O
Article: PROTEOMICS. 2012;12(1):135-144
Proteomic analysis of urinary biomarker candidates for nonmuscle invasive bladder cancer
Linden M; Lind SB; Mayrhofer C; Segersten U; Wester K; Lyutvinskiy Y; Zubarev R; Malmstrom P-U; Pettersson U
Article: PLOS ONE. 2012;7(6):e39605
Conformation Effects of CpG Methylation on Single-Stranded DNA Oligonucleotides: Analysis of the Opioid Peptide Dynorphin-Coding Sequences
Taqi MM; Warmlander SKTS; Yamskova O; Madani F; Bazov I; Luo J; Zubarev R; Verbeek D; Graslund A; Bakalkin G
Article: JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY. 2011;22(12):2246-2255
Novel Cysteine Tags for the Sequencing of Non-Tryptic Disulfide Peptides of Anurans: ESI-MS Study of Fragmentation Efficiency
Samgina TY; Vorontsov EA; Gorshkov VA; Artemenko KA; Nifant'ev IE; Kanawati B; Schmitt-Kopplin P; Zubarev RA; Lebedev AT
Article: JOURNAL OF ANALYTICAL CHEMISTRY. 2011;66(14):1353-1360
Mass spectral study of the skin peptide of brown frog Rana temporaria from Zvenigorod population
Samgina TY; Gorshkov VA; Vorontsov YA; Artemenko KA; Ogourtsov SV; Zubarev RA; Lebedev AT
Article: JOURNAL OF ANALYTICAL CHEMISTRY. 2011;66(13):1298-1306
Investigation of skin secretory peptidome of Rana lessonae frog by mass spectrometry
Samgina TY; Gorshkov VA; Vorontsov YA; Artemenko KA; Ogourtsov SV; Zubarev RA; Lebedev AT
Article: JOURNAL OF ALZHEIMERS DISEASE. 2011;27(1):113-118
Alzheimer's Disease and Mild Cognitive Impairment are Associated with Elevated Levels of Isoaspartyl Residues in Blood Plasma Proteins
Yang H; Lyutvinskiy Y; Soininen H; Zubarev RA
Article: ANALYTICAL CHEMISTRY. 2011;83(20):7651-7656
Increased Throughput of Proteomics Analysis by Multiplexing High-Resolution Tandem Mass Spectra
Ledvina AR; Savitski MM; Zubarev AR; Good DM; Coon JJ; Zubarev RA
Article: JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY. 2011;22(10):1763-1770
Heme Binding in Gas-Phase Holo-Myoglobin Cations: Distal Becomes Proximal?
Enyenihi AA; Yang H; Ytterberg AJ; Lyutvinskiy Y; Zubarev RA
Article: CELLULAR SIGNALLING. 2011;23(8):1387-1395
Toward a comprehensive characterization of the phosphotyrosine proteome
Lind SB; Artemenko KA; Elfineh L; Mayrhofer C; Zubarev RA; Bergquist J; Pettersson U
Article: JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY. 2011;22(8):1441-1452
Effects of Peptide Backbone Amide-to-Ester Bond Substitution on the Cleavage Frequency in Electron Capture Dissociation and Collision-Activated Dissociation
Kjeldsen F; Zubarev RA
Article: BLOOD. 2011;117(20):5381-5390
Myeloid-derived suppressor cells express the death receptor Fas and apoptose in response to T cell-expressed FasL
Sinha P; Chornoguz O; Clements VK; Artemenko KA; Zubarev RA; Ostrand-Rosenberg S
Article: JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY. 2011;22(7):1121-1124
Sequence Scrambling in Shotgun Proteomics is Negligible
Goloborodko AA; Gorshkov MV; Good DM; Zubarev RA
Article: ANALYST. 2011;136(9):1971-1978
Optimization of immunoaffinity enrichment and detection: toward a comprehensive characterization of the phosphotyrosine proteome of K562 cells by liquid chromatography-mass spectrometry
Artemenko KA; Lind SB; Elfineh L; Mayrhofer C; Zubarev RA; Bergquist J; Pettersson U
Article: JOURNAL OF PROTEOME RESEARCH. 2011;10(5):2679-2683
Drug Target Identification from Protein Dynamics using Quantitative Pathway Analysis
Good DM; Zubarev RA
Article: RAPID COMMUNICATIONS IN MASS SPECTROMETRY. 2011;25(7):933-940
Mass spectrometric study of bradykinin-related peptides (BRPs) from the skin secretion of Russian ranid frogs
Samgina TY; Gorshkov VA; Vorontsov YA; Artemenko KA; Zubarev RA; Lebedev AT
Article: GENOMICS PROTEOMICS & BIOINFORMATICS. 2011;9(1-2):15-20
Role of stable isotopes in life--testing isotopic resonance hypothesis.
Zubarev RA
Article: LEUKEMIA. 2011;25(3):515-526
High levels of the adhesion molecule CD44 on leukemic cells generate acute myeloid leukemia relapse after withdrawal of the initial transforming event
Quere R; Andradottir S; Brun ACM; Zubarev RA; Karlsson G; Olsson K; Magnusson M; Cammenga J; Karlsson S
Article: MOLECULAR & CELLULAR PROTEOMICS. 2011;10(3):M110.002980
Proteomic Pathway Analysis Reveals Inflammation Increases Myeloid-Derived Suppressor Cell Resistance to Apoptosis
Chornoguz O; Grmai L; Sinha P; Artemenko KA; Zubarev RA; Ostrand-Rosenberg S
Article: MOLECULAR & CELLULAR PROTEOMICS. 2011;10(3):M900229MCP200-mmcp200
Impact of Temperature Dependent Sampling Procedures in Proteomics and Peptidomics - A Characterization of the Liver and Pancreas Post Mortem Degradome
Scholz B; Skold K; Kultima K; Fernandez C; Waldemarson S; Savitski MM; Soderquist M; Boren M; Stella R; Andren P; Zubarev R; James P
Article: JOURNAL OF PROTEOME RESEARCH. 2011;10(2):529-540
ATP Enhances Neuronal Differentiation of PC12 Cells by Activating PKCα Interactions with Cytoskeletal Proteins
Marin-Vicente C; Guerrero-Valero M; Nielsen ML; Savitski MM; Gomez-Fernandez JC; Zubarev RA; Corbalan-Garcia S
Article: PROGRESS IN CHEMISTRY. 2011;23(8):1710-1718
ECD Technology in Biological Mass Spectrometry
Shi L; Liu S; Zubarev RA
Article: JOURNAL OF ANALYTICAL CHEMISTRY. 2010;65(14):1462-1468
Alternative methods for verifying the results of the mass spectrometric identification of peptides in shotgun proteomics
Goloborod'ko AA; Mayerhofer C; Zubarev AR; Tarasova IA; Gorshkov AV; Zubarev RA; Gorshkov MV
Journal article: BLOOD. 2010;116(21):3154
High Levels of the Adhesion Molecule CD44 on Leukemic Cells Generate Acute Myeloid Leukemia Relapse After Withdrawal of the Initial Transforming Event
Quere R; Andradottir S; Brun A; Zubarev R; Karlsson G; Olsson K; Magnusson M; Cammenga J; Karlsson S
Article: AMERICAN JOURNAL OF HUMAN GENETICS. 2010;87(5):593-603
Prodynorphin Mutations Cause the Neurodegenerative Disorder Spinocerebellar Ataxia Type 23
Bakalkin G; Watanabe H; Jezierska J; Depoorter C; Verschuuren-Bemelmans C; Bazov I; Artemenko KA; Yakovleva T; Dooijes D; Van de Warrenburg BPC; Zubarev RA; Kremer B; Knapp PE; Hauser KF; Wijmenga C; Nyberg F; Sinke RJ; Verbeek DS
Article: PHYSICAL CHEMISTRY CHEMICAL PHYSICS. 2010;12(41):13372-13374
Are the majority of a₂-ions cyclic?
Good DM; Marin-Vicente C; Zubarev RA
Article: JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY. 2010;21(11):1846-1851
Calibration Function for the Orbitrap FTMS Accounting for the Space Charge Effect
Gorshkov MV; Good DM; Lyutvinskiy Y; Yang H; Zubarev RA
Journal article: AMERICAN JOURNAL OF HUMAN GENETICS. 2010;87(5):736
Prodynorphin Mutations Cause the Neurodegenerative Disorder Spinocerebellar Ataxia Type 23 (vol 87, pg 593, 2010)
Bakalkin G; Watanabe H; Jezierska J; Depoorter C; Verschuuren-Bemelmans C; Bazov I; Artemenko KA; Yakovleva T; Dooijes D; Van de Warrenburg BPC; Zubarev RA; Kremer B; Knapp PE; Hauser KF; Wijmenga C; Nyberg F; Sinke RJ; Verbeek DS
Article: RAPID COMMUNICATIONS IN MASS SPECTROMETRY. 2010;24(14):1931-1940
Fourier transform ion cyclotron resonance mass spectrometer with coaxial multi-electrode cell ('O-trap'): first experimental demonstration
Misharin AS; Zubarev RA; Doroshenko VM
Article: ANALYTICAL AND BIOANALYTICAL CHEMISTRY. 2010;397(5):1903-1910
Porcine P2 myelin protein primary structure and bound fatty acids determined by mass spectrometry
Maddalo G; Shariatgorji M; Adams CM; Fung E; Nilsson U; Zubarev RA; Sedzik J; Ilag LL
Article: RAPID COMMUNICATIONS IN MASS SPECTROMETRY. 2010;24(12):1749-1754
Novel natural peptides from Hyla arborea schelkownikowi skin secretion
Samgina TY; Gorshkov VA; Artemenko KA; Kovalev SV; Ogourtsov SV; Zubarev RA; Lebedev AT
Article: PROTEOMICS CLINICAL APPLICATIONS. 2010;4(5):511-518
MS analysis of rheumatoid arthritic synovial tissue identifies specific citrullination sites on fibrinogen
Hermansson M; Artemenko K; Ossipova E; Eriksson H; Lengqvist J; Makrygiannakis D; Catrina AI; Nicholas AP; Klareskog L; Savitski M; Zubarev RA; Jakobsson P-J
Article: BIOCHEMISTRY-MOSCOW. 2010;75(5):554-561
Binding of Sterols Affects Membrane Functioning and Sphingolipid Composition in Wheat Roots
Valitova YN; Kotlova ER; Novikov AV; Shavarda AL; Artemenko KA; Zubarev RA; Minibayeva FV
Journal article: CANCER RESEARCH. 2010;70(8_Supplement):5316
Abstract 5316: Inflammation-induced myeloid-derived suppressor cells have enhanced resistance to apoptosis
Chornoguz OY; Grmail L; Sinha P; Artemenko K; Zubarev R; Ostrand-Rosenberg S
Journal article: CANCER RESEARCH. 2010;70(8_Supplement):5312
Abstract 5312: Myeloid-derived suppressor cells express the death receptor Fas and apoptose in response to T cell-expressed FasL
Sinha P; Chornoguz O; Clements VK; Artemenko K; Zubarev RA; Ostrand-Rosenberg S
Article: CENTRAL EUROPEAN JOURNAL OF BIOLOGY. 2010;5(2):190-196
Early life relict feature in peptide mass distribution
Zubarev RA; Artemenko KA; Zubarev AR; Mayrhofer C; Yang H; Fung YME
Journal article: NEPHROLOGY DIALYSIS TRANSPLANTATION. 2010;25(4):1019-1022
Systems biology to battle vascular disease
Dominiczak AF; Herget-Rosenthal S; Delles C; Fliser D; Fournier I; Graber A; Girolami M; Holmes E; Lang F; Molina F; Nicholson J; Remuzzi G; Rossing P; Rudolph KL; Wolkenhauer O; Xenarios I; Zubarev R; Zubov D; Vlahou A; Schanstra JP
Article: RAPID COMMUNICATIONS IN MASS SPECTROMETRY. 2010;24(4):454-462
Empirical approach to false discovery rate estimation in shotgun proteomics
Goloborodko AA; Mayerhofer C; Zubarev AR; Tarasova IA; Gorshkov AV; Zubarev RA; Gorshkov MV
Article: ANGEWANDTE CHEMIE-INTERNATIONAL EDITION. 2010;49(8):1439-1441
Multiple Soft Ionization of Gas-Phase Proteins and Swift Backbone Dissociation in Collisions with ≤ 99 eV Electrons
Zubarev RA; Yang H
Journal article: ANGEWANDTE CHEMIE-INTERNATIONAL EDITION. 2010;122(8):1481-1483
Multiple Soft Ionization of Gas‐Phase Proteins and Swift Backbone Dissociation in Collisions with ≤99 eV Electrons
Zubarev RA; Yang H
Journal article: JOURNAL OF THE MASS SPECTROMETRY SOCIETY OF JAPAN. 2010;58(3):117-119
Report of “The 7th Uppsala Conference on Electron Capture and Transfer Dissociation (UPPCON09)”
Yoshinao W; Takashi B; ZUBAREV R
Journal article: CHEMICAL RESEARCH IN CHINESE UNIVERSITIES. 2010;26(1):17-22
Rapid Purification and Identification of Osteopontin from Human Milk by HPLC Coupled to FT-ICR-MS
Shi L; Yang T-Z; Roman ZA
Article: JOURNAL OF PROTEOME RESEARCH. 2009;8(12):5650-5656
Apoptotic, Regenerative, And Immune-Related Signaling in Human Islets from Type 2 Diabetes Individuals
Nyblom HK; Bugliani M; Fung E; Boggi U; Zubarev R; Marchetti P; Bergsten P
Article: BIOCHEMISTRY-MOSCOW. 2009;74(11):1195-1202
Use of models of biomacromolecule separation in AMT database generation for shotgun proteomics
Pridatchenko ML; Tarasova IA; Guryca V; Kononikhin AS; Adams C; Tolmachev DA; Agapov AY; Evreinov VV; Popov IA; Nikolaev EN; Zubarev RA; Gorshkov AV; Masselon CD; Gorshkov MV
Article: ANGEWANDTE CHEMIE-INTERNATIONAL EDITION. 2009;48(44):8340-8342
Room-Temperature Infrared Spectroscopy Combined with Mass Spectrometry Distinguishes Gas-Phase Protein Isomers
Fung YME; Besson T; Lemaire J; Maitre P; Zubarev RA
Journal article: ANGEWANDTE CHEMIE-INTERNATIONAL EDITION. 2009;121(44):8490-8492
Room‐Temperature Infrared Spectroscopy Combined with Mass Spectrometry Distinguishes Gas‐Phase Protein Isomers
Fung YME; Besson T; Lemaire J; Maitre P; Zubarev RA
Article: JOURNAL OF PROTEOME RESEARCH. 2009;8(10):4615-4621
Toward Proteome-Scale Identification and Quantification of Isoaspartyl Residues in Biological Samples
Yang H; Fung EYM; Zubarev AR; Zubarev RA
Article: MOLECULAR BIOLOGY OF THE CELL. 2009;20(15):3459-3470
The Exosome Associates Cotranscriptionally with the Nascent Pre-mRNP through Interactions with Heterogeneous Nuclear Ribonucleoproteins
Hessle V; Bjork P; Sokolowski M; de Valdivia EG; Silverstein R; Artemenko K; Tyagi A; Maddalo G; Ilag L; Helbig R; Zubarev RA; Visa N
Article: JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. 2009;131(29):9977-9985
Electron Ionization Dissociation of Singly and Multiply Charged Peptides
Fung YME; Adams CM; Zubarev RA
Article: ANALYTICAL CHEMISTRY. 2009;81(10):3738-3745
Two Dimensional Mass Mapping as a General Method of Data Representation in Comprehensive Analysis of Complex Molecular Mixtures
Artemenko KA; Zubarev AR; Samgina TY; Lebedev AT; Savitski MM; Zubarev RA
Article: RAPID COMMUNICATIONS IN MASS SPECTROMETRY. 2009;23(9):1241-1248
Mass spectrometric study of peptides secreted by the skin glands of the brown frog Rana arvalis from the Moscow region
Samgina TY; Artemenko KA; Gorshkov VA; Ogourtsov SV; Zubarev RA; Lebedev AT
Article: MOLECULAR & CELLULAR PROTEOMICS. 2009;8(5):1117-1129
Proteomics and Pathway Analysis Identifies JNK Signaling as Critical for High Linear Energy Transfer Radiation-induced Apoptosis in Non-small Lung Cancer Cells
Stahl S; Fung E; Adams C; Lengqvist J; Mork B; Stenerlow B; Lewensohn R; Lehtio J; Zubarev R; Viktorsson K
Article: MICROBIOLOGY. 2009;78(2):193-201
Alterations in the composition of membrane glycero-and sphingolipids in the course of Flammulina velutipes surface culture development
Kotlova ER; Senik SV; Kucher T; Shavarda AL; Kiyashko AA; Psurtseva NV; Sinyutina NF; Zubarev RA
Journal article: MICROBIOLOGY. 2009;78(2):226-235
[Changes of membrane glycerolipids and sphingolipids during Flammulina velutipes surface growth].
Kotlova ER; Senik SV; Köcher T; Shavarda AL; Kiiashko AA; Psurtseva NV; Siniutina NF; Zubarev RA
Article: METHODS IN MOLECULAR BIOLOGY. 2009;492:413-416
Electron capture dissociation LC/MS/MS for bottom-up proteomics.
Zubarev RA
Article: JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY. 2008;19(12):1755-1763
Bifurcating Fragmentation Behavior of Gas-Phase Tryptic Peptide Dications in Collisional Activation
Savitski MM; Hith M; Fung YME; Adams CM; Zubarev RA
Article: RAPID COMMUNICATIONS IN MASS SPECTROMETRY. 2008;22(22):3517-3525
De novo sequencing of peptides secreted by the skin glands of the Caucasian Green Frog Rana ridibunda
Samgina TY; Artemenko KA; Gorshkov VA; Ogourtsov SV; Zubarev RA; Lebedev AT
Article: ANALYTICAL CHEMISTRY. 2008;80(21):8089-8094
Analytical Utility of Small Neutral Losses from Reduced Species in Electron Capture Dissociation Studied Using SwedECD Database
Falth M; Savitski MM; Nielsen ML; Kjeldsen F; Andren PE; Zubarev RA
Article: JOURNAL OF PROTEOME RESEARCH. 2008;7(7):2897-2910
Immunoaffinity enrichments followed by mass spectrometric detection for studying global protein tyrosine phosphorylation
Lind SB; Molin M; Savitski MM; Emilsson L; Astrom J; Hedberg L; Adams C; Nielsen ML; Engstrom A; Elfineh L; Andersson E; Zubarev RA; Pettersson U
Article: JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY. 2008;19(6):753-761
Electron capture/transfer versus collisionally activated/induced dissociations: Solo or duet?
Zubarev RA; Zubarev AR; Savitski MM
Article: JOURNAL OF PROTEOMICS. 2008;71(1):89-96
Identification of dominant signaling pathways from proteomics expression data
Zubarev RA; Nielsen ML; Fung EM; Savitski MM; Kel-Margoulis O; Wingender E; Kel A
Article: POLYMER SCIENCE SERIES B. 2008;50(3):309-321
Applicability of the critical chromatography concept to proteomics problems: Experimental study of the dependence of peptide retention time on the sequence of amino acids in the chain
Tarasova IA; Gorshkov AV; Evreinov VV; Adams K; Zubarev RA; Gorshkov MV
Article: JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. 2008;130(4):1341-1349
Electron capture dissociation proceeds with a low degree of intramolecular migration of peptide amide hydrogens
Rand KD; Adams CM; Zubarev RA; Jorgensen TJD
Article: INTERNATIONAL JOURNAL OF MASS SPECTROMETRY. 2007;268(2-3):73-82
Mass spectrometry of proteins -: Uppsala perspectives on past and present
Bergquist J; Hakansson P; Sundqvist B; Zubarev R
Article: JOURNAL OF PHYSICAL CHEMISTRY B. 2007;111(46):13147-13150
A direct comparison of protein structure in the gas and solution phase: The TRP-cage
Patriksson A; Adams CM; Kjeldsen F; Zubarev RA; van der Spoel D
Article: JOURNAL OF PROTEOME RESEARCH. 2007;6(10):4063-4067
SwedCAD, a database of annotated high-mass accuracy MS/MS spectra of tryptic peptides
Falth M; Savitski MM; Nielsen ML; Kjeldsen F; Andren PE; Zubarev RA
Article: ANALYST. 2007;132(8):768-776
On studying protein phosphorylation patterns using bottom-up LC-MS/MS:: the case of human α-casein
Kjeldsen F; Savitski MM; Nielsen ML; Shi L; Zubarev RA
Article: JOURNAL OF PROTEOME RESEARCH. 2007;6(7):2669-2673
Relative specificities of water and ammonia losses from backbone fragments in collision-activated dissociation
Savitski MM; Kjeldsen F; Nielsen ML; Zubarev RA
Article: MOLECULAR BIOLOGY OF THE CELL. 2007;18(5):1670-1682
The RBCC gene RFP2 (leu5) encodes a novel transmembrane E3 ubiquitin ligase involved in ERAD
Lerner M; Corcoran M; Cepeda D; Nielsen ML; Zubarev R; Ponten F; Uhlen M; Hober S; Grander D; Sangfelt O
Article: ANALYTICAL CHEMISTRY. 2007;79(6):2296-2302
Side-chain losses in electron capture dissociation to improve peptide identification
Savitski MM; Nielsen ML; Zubarev RA
Article: ANGEWANDTE CHEMIE-INTERNATIONAL EDITION. 2007;46(9):1481-1484
Backbone carbonyl group basicities are related to gas-phase fragmentation of peptides and protein folding
Savitski MM; Kjeldsen F; Nielsen ML; Garbuzynskiy SO; Galzitskaya OV; Surin AK; Zubarev RA
Journal article: ANGEWANDTE CHEMIE-INTERNATIONAL EDITION. 2007;119(9):1503-1506
Backbone Carbonyl Group Basicities Are Related to Gas‐Phase Fragmentation of Peptides and Protein Folding
Savitski MM; Kjeldsen F; Nielsen ML; Garbuzynskiy SO; Galzitskaya OV; Surin AK; Zubarev RA
Article: EUROPEAN JOURNAL OF MASS SPECTROMETRY. 2007;13(2):155-163
Electrospray ionization tandem mass spectrometry sequencing of novel skin peptides from Ranid frogs containing disulfide bridges
Samgina TY; Arternenko KA; Gorshkov VA; Lebedev A; Nielsen ML; Savitski MM; Zubarev RA
Article: JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY. 2007;18(1):113-120
Hydrogen rearrangement to and from radical z fragments in electron capture dissociation of peptides
Savitski MM; Kjeldsen F; Nielsen ML; Zubarev RA
Article: JOURNAL OF PROTEOME RESEARCH. 2007;6(1):114-123
De novo peptide sequencing and identification with precision mass spectrometry
Frank AM; Savitski MM; Nielsen ML; Zubarev RA; Pevzner PA
Article: MOLECULAR & CELLULAR PROTEOMICS. 2006;5(12):2384-2391
Extent of modifications in human proteome samples and their effect on dynamic range of analysis in shotgun proteomics
Nielsen ML; Savitski MM; Zubarev RA
Article: ANALYTICAL CHEMISTRY. 2006;78(22):7770-7777
Liquid chromatography at critical conditions: Comprehensive approach to sequence-dependent retention time prediction
Gorshkov AV; Tarasova IA; Evreinov VV; Savitski MM; Nielsen ML; Zubarev RA; Gorshkov MV
Article: RAPID COMMUNICATIONS IN MASS SPECTROMETRY. 2006;20(21):3223-3228
Coaxial multi-electrode cell (′O-trap′) for high-sensitivity detection at a multiple frequency in Fourier transform ion cyclotron resonance mass spectrometry:: main design and modeling results
Misharin AS; Zubarev RA
Article: CHEMISTRY-A EUROPEAN JOURNAL. 2006;12(30):7920-7928
Zwitterionic states in gas-phase polypeptide ions revealed by 157-nm ultra-violet photodissociation
Kjeldsen F; Silivra OA; Zubarev RA
Article: ANGEWANDTE CHEMIE-INTERNATIONAL EDITION. 2006;45(32):5301-5303
Complementary sequence preferences of electron-capture dissociation and vibrational excitation in fragmentation of polypeptide polycations
Savitski MM; Kjeldsen F; Nielsen ML; Zubarev RA
Journal article: ANGEWANDTE CHEMIE-INTERNATIONAL EDITION. 2006;118(32):5427-5429
Complementary Sequence Preferences of Electron‐Capture Dissociation and Vibrational Excitation in Fragmentation of Polypeptide Polycations
Savitski MM; Kjeldsen F; Nielsen ML; Zubarev RA
Article: INTERNATIONAL JOURNAL OF MASS SPECTROMETRY. 2006;253(3):263-273
Probing solution- and gas-phase structures of Trp-cage cations by chiral substitution and spectroscopic techniques
Adams CM; Kjeldsen F; Patriksson A; van der Spoel D; Graslund A; Papadopoulos E; Zubarev RA
Article: INTERNATIONAL JOURNAL OF MASS SPECTROMETRY. 2006;252(3):204-212
Determination of the location of positive charges in gas-phase polypeptide polycations by tandem mass spectrometry
Kjeldsen F; Savitski MM; Adams CM; Zubarev RA
Article: MOLECULAR & CELLULAR PROTEOMICS. 2006;5(5):935-948
ModifiComb, a new proteomic tool for mapping substoichiometric post-translational modifications, finding novel types of modifications, and fingerprinting complex protein mixtures
Savitski MM; Nielsen ML; Zubarev RA
Article: JOURNAL OF PROTEOME RESEARCH. 2006;5(3):659-668
PhosTShunter:: A fast and reliable tool to detect phosphorylated peptides in liquid chromatography Fourier transform tandem mass spectrometry data sets
Köcher T; Savitski MM; Nielsen ML; Zubarev RA
Article: INTERNATIONAL JOURNAL OF MASS SPECTROMETRY. 2006;248(3):124-135
Prediction of N-C_α bond cleavage frequencies in electron capture dissociation of Trp-cage dications by force-field molecular dynamics simulations
Patriksson A; Adams C; Kjeldsen F; Raber J; van der Spoel D; Zubarev RA
Article: JOURNAL OF PROTEOME RESEARCH. 2005;4(6):2348-2354
Proteomics-grade de novo sequencing approach
Savitski MM; Nielsen ML; Kjeldsen F; Zubarev RA
Article: ANGEWANDTE CHEMIE-INTERNATIONAL EDITION. 2005;44(39):6399-6403
Facile disulfide bond cleavage in gaseous peptide and protein cations by ultraviolet photodissociation at 157 nm
Fung YME; Kjeldsen F; Silivra OA; Chan TWD; Zubarev RA
Journal article: ANGEWANDTE CHEMIE-INTERNATIONAL EDITION. 2005;117(39):6557-6561
Facile Disulfide Bond Cleavage in Gaseous Peptide and Protein Cations by Ultraviolet Photodissociation at 157 nm
Fung YME; Kjeldsen F; Silivra OA; Chan TWD; Zubarev RA
Article: RAPID COMMUNICATIONS IN MASS SPECTROMETRY. 2005;19(15):2163-2171
Dissociation of peptide ions by fast atom bombardment in a quadrupole ion trap
Misharin AS; Silivra OA; Kjeldsen F; Zubarev RA
Article: MOLECULAR & CELLULAR PROTEOMICS. 2005;4(8):1180-1188
New data base-independent, sequence tag-based scoring of peptide MS/MS data validates Mowse scores, recovers below threshold data, singles out modified peptides, and assesses the quality of MS/MS techniques
Savitski MM; Nielsen ML; Zubarev RA
Article: ANALYTICAL CHEMISTRY. 2005;77(14):4571-4580
Distinguishing and quantifying peptides and proteins containing D-amino acids by tandem mass spectrometry
Adams CM; Zubarev RA
Article: MOLECULAR & CELLULAR PROTEOMICS. 2005;4(6):835-845
Improving protein identification using complementary fragmentation techniques in Fourier transform mass spectrometry
Nielsen ML; Savitski MM; Zubarev RA
Article: ANALYTICAL CHEMISTRY. 2005;77(9):2992-2996
Two-fold efficiency increase by selective excitation of ions for consecutive activation by ion-electron reactions and vibrational excitation in tandem Fourier transform ion cyclotron resonance mass spectrometry
Zubarev RA; Witt M; Baykut G
Article: JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY. 2005;16(4):548-552
Characterization of an N-acylated glucagon-like peptide-1 derivative by electron capture dissociation
Haselmann KF; Nielsen PF; Zubarev RA
Article: CHEMISTRY-A EUROPEAN JOURNAL. 2005;11(6):1803-1812
C_α-C backbone fragmentation dominates in electron detachment dissociation of gas-phase polypeptide polyanions
Kjeldsen F; Silivra OA; Ivonin IA; Haselmann KF; Gorshkov M; Zubarev RA
Article: JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY. 2005;16(1):22-27
Electron capture dissociation of polypeptides in a three-dimensional quadrupole ion trap: Implementation and first results
Silivra OA; Kjeldsen F; Ivonin IA; Zubarev RA
Article: ANALYTICAL CHEMISTRY. 2005;77(1):172-177
Fragmentation of peptides in MALDI in-source decay mediated by hydrogen radicals
Köcher T; Engström Å; Zubarev RA
Article: PROTEOMICS. 2004;4(12):4010-4018
Cerebrospinal fluid protein patterns in neurodegenerative disease revealed by liquid chromatography-Fourier transform ion cyclotron resonance mass spectrometry
Ramström M; Ivonin I; Johansson A; Askmark H; Markides KE; Zubarev R; Håkansson P; Aquilonius SM; Bergquist J
Article: ANALYTICAL CHEMISTRY. 2004;76(19):5872-5877
Physicochemical properties determining the detection probability of tryptic peptides in Fourier transform mass spectrometry. A correlation study
Nielsen ML; Savitski MM; Kjeldsen F; Zubarev RA
Article: JOURNAL OF CHEMICAL PHYSICS. 2004;121(12):5700-5708
Dissociative recombination cross section and branching ratios of protonated dimethyl disulfide and N-methylacetamide
Al-Khalili A; Thomas R; Ehlerding A; Hellberg F; Geppert WD; Zhaunerchyk V; af Ugglas M; Larsson M; Uggerud E; Vedde J; Adlhart C; Semaniak J; Kaminska M; Zubarev RA; Kjeldsen F; Andersson PU; Österdahl F; Bednarska VA; Paál A
Article: JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY. 2004;15(7):1087-1098
Electron capture dissociation distinguishes a single D-amino acid in a protein and probes the tertiary structure
Adams CM; Kjeldsen F; Zubarev RA; Budnik BA; Haselmann KF
Journal article: CHEMINFORM. 2004;35(18):no
Reactions of Polypeptide Ions with Electrons in the Gas Phase
Zubarev RA
Article: JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY. 2004;15(4):457-461
Shifted-basis technique improves accuracy of peak position determination in Fourier transform mass spectrometry
Savitski MM; Ivonin IA; Nielsen ML; Zubarev RA; Tsybin YO; Håkansson P
Article: JOURNAL OF MASS SPECTROMETRY. 2004;39(2):193-201
De novo sequencing of antimicrobial peptides isolated from the venom glands of the wolf spider Lycosa singoriensis
Budnik BA; Olsen JV; Egorov TA; Anisimova VE; Galkina TG; Musolyamov AK; Grishin EV; Zubarev RA
Article: ANALYTICAL CHEMISTRY. 2003;75(21):5994-6001
Applications of electron-ion dissociation reactions for analysis of polycationic chitooligosaccharides in Fourier transform mass spectrometry
Budnik BA; Haselmann KF; Elkin YN; Gorbach VI; Zubarev RA
Article: JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. 2003;125(22):6628-6629
Secondary losses via γ-lactam formation in hot electron capture dissociation:: A missing link to complete de novo sequencing of proteins?
Kjeldsen F; Zubarev R
Article: ANALYTICAL CHEMISTRY. 2003;75(10):2355-2361
Complete characterization of posttranslational modification sites in the bovine milk protein PP3 by tandem mass spectrometry with electron capture dissociation as the last stage
Kjeldsen F; Haselmann KF; Budnik BA; Sorensen ES; Zubarev RA
Journal article: CHEMINFORM. 2003;34(19):no
Towards an Understanding of the Mechanism of Electron‐Capture Dissociation: A Historical Perspective and Modern Ideas
Zubarev RA; Haselmann KF; Budnik B; Kjeldsen F; Jensen F
Article: ANALYTICAL CHEMISTRY. 2003;75(6):1267-1274
Distinguishing of Ile/Leu amino acid residues in the PP3 protein by (hot) electron capture dissociation in Fourier transform ion cyclotron resonance mass spectrometry
Kjeldsen F; Haselmann KF; Sorensen ES; Zubarev RA
Article: INTERNATIONAL JOURNAL OF MASS SPECTROMETRY. 2003;226(1):181-187
Tandem MALDI/El ionization for tandem Fourier transform ion cyclotron resonance mass spectrometry of polypeptides
Nielsen ML; Budnik BA; Haselmann KF; Zubarev RA
Article: EUROPEAN JOURNAL OF MASS SPECTROMETRY. 2003;9(2):139-148
Towards the standard-module approach to disulfide-linked polypeptide nanostructures. I. Methodological prerequisites and mass spectrometric characterization of the test two-loop structure
Mirgorodskaya OA; Haselmann KF; Kjeldsen F; Zubarev RA; Roepstorff P
Article: RAPID COMMUNICATIONS IN MASS SPECTROMETRY. 2002;16(24):2260-2265
Electron capture dissociation of weakly bound polypeptide polycationic complexes
Haselmann KF; Jorgensen TJD; Budnik BA; Jensen F; Zubarev RA
Article: EUROPEAN JOURNAL OF MASS SPECTROMETRY. 2002;8(6):461-469
Can the (M•-X) region in electron capture dissociation provide reliable information on amino acid composition of polypeptides?
Haselmann KF; Budnik BA; Kjeldsen F; Polfer NC; Zubarev RA
Article: JOURNAL OF MASS SPECTROMETRY. 2002;37(11):1141-1144
Ionization energies of multiply protonated polypeptides obtained by tandem ionization in Fourier transform mass spectrometers
Budnik BA; Tsybin YO; Håkansson P; Zubarev RA
Article: EUROPEAN JOURNAL OF MASS SPECTROMETRY. 2002;8(5):337-349
Towards an understanding of the mechanism of electron-capture dissociation: a historical perspective and modern ideas
Zubarev RA; Haselmann KF; Budnik B; Kjeldsen F; Jensen F
Article: INTERNATIONAL JOURNAL OF MASS SPECTROMETRY. 2002;219(1):283-294
Can relative cleavage frequencies in peptides provide additional sequence information?
Budnik BA; Nielsen ML; Olsen JV; Haselmann KF; Hörth P; Haehnel W; Zubarev RA
Article: JOURNAL OF CHROMATOGRAPHY A. 2002;962(1-2):95-103
High-performance liquid chromatography-mass spectrometry and electron-capture dissociation tandem mass spectrometry of osteocalcin -: Determination of γ-carboxyglutamic acid residues
Niiranen H; Budnik BA; Zubarev RA; Auriola S; Lapinjoki S
Article: JOURNAL OF BIOLOGICAL CHEMISTRY. 2002;277(25):22623-22638
Functional conservation of subfamilies of putative UDP-N-acetylgalactosamine:polypeptide N-acetylgalactosaminyltransferases in Drosophila, Caenorhabditis elegans, and mammals -: One subfamily composed of l(2)35Aa is essential in Drosophila
Schwientek T; Bennett EP; Flores C; Thacker J; Hollmann M; Reis CA; Behrens J; Mandel U; Keck B; Schäfer MA; Haselmann K; Zubarev R; Roepstorff P; Burchell JM; Taylor-Papadimitriou J; Hollingsworth MA; Clausen H
Article: RAPID COMMUNICATIONS IN MASS SPECTROMETRY. 2002;16(10):936-943
Electron capture dissociation of polypeptides using a 3 Tesla Fourier transform ion cyclotron resonance mass spectrometer
Polfer NC; Haselmann KF; Zubarev RA; Langridge-Smith PRR
Article: EUROPEAN JOURNAL OF MASS SPECTROMETRY. 2002;8(2):117-121
Electronic excitation gives informative fragmentation of polypeptide cations and anions
Haselmann KF; Budnik BA; Kjeldsen F; Nielsen ML; Olsen JV; Zubarev RA
Article: EUROPEAN JOURNAL OF MASS SPECTROMETRY. 2002;8(2):79-84
Polymer track membranes for extraction of ions from aqueous solutions at atmospheric pressure
Balakin AA; Dodonov AF; Markin MI; Novikova LI; Soulimenkov IV; Talroze VL; Budnik BA; Haselmann KF; Zubarev RA
Article: CHEMICAL PHYSICS LETTERS. 2002;356(3-4):201-206
Dissociative capture of hot (3-13 eV) electrons by polypeptide polycations: an efficient process accompanied by secondary fragmentation
Kjeldsen F; Haselmann KF; Budnik BA; Jensen F; Zubarev RA
Article: RAPID COMMUNICATIONS IN MASS SPECTROMETRY. 2001;15(19):1849-1854
Improved low-energy electron injection systems for high rate electron capture dissociation in Fourier transform ion cyclotron resonance mass spectrometry
Tsybin YO; Håkansson P; Budnik BA; Haselmann KF; Kjeldsen F; Gorshkov M; Zubarev RA
Article: ANGEWANDTE CHEMIE-INTERNATIONAL EDITION. 2001;40(13):2497-2500
Tetrathiafulvaleno-annelated porphyrins
Becher J; Brimert T; Jeppesen JO; Pedersen JZ; Zubarev R; Bjornholm T; Reitzel N; Jensen TR; Kjaer K; Levillain E
Journal article: ANGEWANDTE CHEMIE-INTERNATIONAL EDITION. 2001;113(13):2565-2568
Tetrathiafulvaleno‐Annelated Porphyrins
Becher J; Brimert T; Jeppesen JO; Pedersen JZ; Zubarev R; Bjørnholm T; Reitzel N; Jensen TR; Kjaer K; Levillain E
Journal article: ANGEWANDTE CHEMIE-INTERNATIONAL EDITION. 2001;40(13):2497-2500
Tetrathiafulvaleno-Annelated Porphyrins We gratefully acknowledge financial support from Carlsbergfondet and Bengt Lundquists Minnesfond for a post-doctoral position to T. B., the University of Odense for a Ph.D. scholarship to J. O. J. and the French Embassy Copenhagen for a travel grant to J. B. We thank HASYLAB at DESY, Hamburg for beam time at beam line BW1 and DANSYNC for financial support. The gift of Jan Skov Peterson's FORTRAN program LSQREFL is gratefully acknowledged. Finally, we thank Prof. K. S. Murray, University of Monash, Australia for helpful discussions.
Becher J; Brimert T; Jeppesen JO; Pedersen JZ; Zubarev R; Bjørnholm T; Reitzel N; Jensen TR; Kjaer K; Levillain E
Article: ANALYTICAL CHEMISTRY. 2001;73(13):2998-3005
Advantages of external accumulation for electron capture dissociation in Fourier transform mass spectrometry
Haselmann KF; Budnik BA; Olsen JV; Nielsen ML; Reis CA; Clausen H; Johnsen AH; Zubarev RA
Article: CHEMICAL PHYSICS LETTERS. 2001;342(3-4):299-302
Electron detachment dissociation of peptide di-anions: an electron-hole recombination phenomenon
Budnik BA; Haselmann KF; Zubarev RA
Article: RAPID COMMUNICATIONS IN MASS SPECTROMETRY. 2001;15(12):969-974
Comparison of electron capture dissociation and collisionally activated dissociation of polycations of peptide nucleic acids
Olsen JV; Haselmann KF; Nielsen ML; Budnik BA; Nielsen PE; Zubarev RA
Article: JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY. 2001;12(3):245-249
Electron capture dissociation of gaseous multiply charged ions by Fourier-transform ion cyclotron resonance
McLafferty FW; Horn DM; Breuker K; Ge Y; Lewis MA; Cerda B; Zubarev RA; Carpenter BK
Article: RAPID COMMUNICATIONS IN MASS SPECTROMETRY. 2000;14(23):2242-2246
Electron capture dissociation of b²⁺ peptide fragments reveals the presence of the acylium ion structure
Haselmann KF; Budnik BA; Zubarev RA
Article: CHEMICAL PHYSICS LETTERS. 2000;330(5-6):558-562
Intramolecular hydrogen atom transfer in hydrogen-deficient polypeptide radical cations
Nielsen ML; Budnik BA; Haselmann KF; Olsen JV; Zubarev RA
Article: RAPID COMMUNICATIONS IN MASS SPECTROMETRY. 2000;14(19):1793-1800
Electron capture dissociation of singly and multiply phosphorylated peptides
Stensballe A; Jensen ON; Olsen JV; Haselmann KF; Zubarev RA
Article: PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. 2000;97(19):10313-10317
Automated de novo sequencing of proteins by tandem high-resolution mass spectrometry
Horn DM; Zubarev RA; McLafferty FW
Article: RAPID COMMUNICATIONS IN MASS SPECTROMETRY. 2000;14(7):578-584
Benefits of 2.94 μm infrared matrix-assisted laser desorption/ionization for analysis of labile molecules by Fourier transform mass spectrometry
Budnik BA; Jensen KB; Jorgensen TJD; Haase A; Zubarev RA
Article: JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY. 2000;11(4):320-332
Automated reduction and interpretation of high resolution electrospray mass spectra of large molecules
Horn DM; Zubarev RA; McLafferty FW
Article: JOURNAL OF MASS SPECTROMETRY. 2000;35(3):337-346
Low-mass ions observed in plasma desorption mass spectrometry of high explosives
Håkansson K; Coorey RV; Zubarev RA; Talrose VL; Håkansson P
Article: ANALYTICAL CHEMISTRY. 2000;72(3):563-573
Electron capture dissociation for structural characterization of multiply charged protein cations
Zubarev RA; Horn DM; Fridriksson EK; Kelleher NL; Kruger NA; Lewis MA; Carpenter BK; McLafferty FW
Article: REVIEW OF SCIENTIFIC INSTRUMENTS. 2000;71(1):36-41
Design and performance of an electrospray ionization time-of-flight mass spectrometer
Håkansson K; Zubarev RA; Håkansson P; Laiko V; Dodonov AF
Article: JOURNAL OF MATERIALS CHEMISTRY. 2000;10(10):2249-2258
Synthesis of linear oligo-TTFs and their [2]rotaxanes with cyclobis(paraquat-p-phenylene)
Damgaard D; Nielsen MB; Lau J; Jensen KB; Zubarev R; Levillain E; Becher J
Article: CHEMICAL COMMUNICATIONS. 2000;(3):215-216
Tetrathiafulvalene-phenanthroline macrocycles as redox responsive sensors for metal ions
Bang KS; Nielsen MB; Zubarev R; Becher J
Article: CHEMICAL PHYSICS LETTERS. 2000;316(1-2):19-23
MH^2+• ion production from protonated polypeptides by electron impact:: observation and determination of ionization energies and a cross-section
Budnik BA; Zubarev RA
Article: ANALYTICAL CHEMISTRY. 1999;71(20):4431-4436
Localization of O-glycosylation sites in peptides by electron capture dissociation in a fourier transform mass spectrometer
Mirgorodskaya E; Roepstorff P; Zubarev RA
Article: ANALYTICAL CHEMISTRY. 1999;71(19):4250-4253
Localization of labile posttranslational modifications by electron capture dissociation:: The case of γ-carboxyglutamic acid
Kelleher RL; Zubarev RA; Bush K; Furie B; Furie BC; McLafferty FW; Walsh CT
Article: RAPID COMMUNICATIONS IN MASS SPECTROMETRY. 1999;13(12):1169-1174
Interaction between explosive and analyte layers in explosive matrix-assisted plasma desorption mass spectrometry
Håkansson K; Zubarev RA; Coorey RV; Talrose VL; Håkansson P
Article: SCIENCE. 1999;284(5418):1289-1290
Biochemistry - Biomolecule mass spectrometry
McLafferty FW; Fridriksson EK; Horn DM; Lewis MA; Zubarev RA
Article: INTERNATIONAL JOURNAL OF MASS SPECTROMETRY. 1999;185:787-793
Electron capture dissociation of multiply charged peptide cations
Kruger NA; Zubarev RA; Horn DM; McLafferty FW
Article: INTERNATIONAL JOURNAL OF MASS SPECTROMETRY. 1999;182:1-5
Electron capture versus energetic dissociation of protein ions
Kruger NA; Zubarev RA; Carpenter BK; Kelleher NL; Horn DM; McLafferty FW
Article: JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. 1999;121(12):2857-2862
Electron capture dissociation of gaseous multiply-charged proteins is favored at disulfide bonds and other sites of high hydrogen atom affinity
Zubarev RA; Kruger NA; Fridriksson EK; Lewis MA; Horn DM; Carpenter BK; McLafferty FW
Article: RAPID COMMUNICATIONS IN MASS SPECTROMETRY. 1998;12(11):705-711
Combination of nozzle-skimmer fragmentation and partial acid hydrolysis in electrospray ionization time-of-flight mass spectrometry of synthetic peptides
Hakansson K; Zubarev R; Hakansson P
Article: JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. 1998;120(13):3265-3266
Electron capture dissociation of multiply charged protein cations. A nonergodic process
Zubarev RA; Kelleher NL; McLafferty FW
Article: JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY. 1998;9(2):149-156
Isotope depletion of large biomolecules: Implications for molecular mass measurements
Zubarev RA; Demirev PA
Article: ANALYTICAL CHEMISTRY. 1997;69(15):2893-2900
Probing combinatorial library diversity by mass spectrometry
Demirev PA; Zubarev RA
Article: RAPID COMMUNICATIONS IN MASS SPECTROMETRY. 1997;11(9):963-972
Delayed, gas-phase ion formation in plasma desorption mass spectrometry
Zubarev RA; Abeywarna UK; Demirev P; Eriksson J; Papaleo R; Hakansson P; Sundqvist BUR
Article: RAPID COMMUNICATIONS IN MASS SPECTROMETRY. 1997;11(1):63-70
Enhancement of the molecular ion yield in plasma desorption mass spectrometry using explosive matrices
Zubarev RA; Hakansson P; Sundqvist N; Talrose VL
Article: RAPID COMMUNICATIONS IN MASS SPECTROMETRY. 1996;10(15):1966-1974
Kinetic energies of secondary ions in MeV and keV particle-induced desorption
Zubarev RA; Abeywarna U; Hakansson P; Demirev P; Sundqvist BUR
Article: RAPID COMMUNICATIONS IN MASS SPECTROMETRY. 1996;10(12):1429-1432
A three-point calibration procedure for matrix-assisted laser desorption/ionization mass spectrometry utilizing multiply charged ions and their mean initial velocities
Vera CC; Zubarev R; Ehring H; Hakansson P; Sunqvist BUR
Article: BIOORGANICHESKAYA KHIMIYA. 1996;22(8):585-588
An improved sample preparation technique for Cf-252 plasma desorption mass spectrometry of proteins and peptides
Chivanov VD; Zubarev RA; Aksenov SA; Bordunova OG; Eremenko VI; Kabanets VM; Tatarinova VI; Mishnev AK; Kuraev VV; Knysh AN; Eremenko IA
Article: RAPID COMMUNICATIONS IN MASS SPECTROMETRY. 1996;10(11):1386-1392
Accurate monoisotopic mass measurements of peptides: Possibilities and limitations of high resolution time-of-flight particle desorption mass spectrometry
Zubarev RA; Hakansson P; Sundqvist B
Article: ANALYTICAL CHEMISTRY. 1996;68(22):4060-4063
Accuracy requirements for peptide characterization by monoisotopic molecular mass measurements
Zubarev RA; Hakansson P; Sundqvist B
Journal article: RAPID COMMUNICATIONS IN MASS SPECTROMETRY. 1994;8(11):906-912
PEPTIDE SEQUENCING BY PARTIAL ACID-HYDROLYSIS AND HIGH-RESOLUTION PLASMA DESORPTION MASS-SPECTROMETRY
ZUBAREV RA; CHIVANOV VD; HAKANSSON P; SUNDQVIST BUR
Journal article: INTERNATIONAL JOURNAL OF MASS SPECTROMETRY AND ION PROCESSES. 1994;138:159-172
PLASMA DESORPTION MASS-SPECTROMETRY IN STUDIES OF FORMATION AND SPUTTERING OF FULLERENES BY MEV ATOMIC IONS
BITENSKY I; BRINKMALM G; DEMIREV P; ERIKSSON J; HAKANSSON P; PAPALEO R; SUNDQVIST BUR; ZUBAREV R
Journal article: BIOORGANICHESKAYA KHIMIYA. 1994;20(7):782-789
[(252)Cf-plasma desorption mass spectra of bacterial oligosaccharides].
El'kin IN; Komandrova NA; Tomshich SV; Bondarenko PV; Zubarev RA; Knish AN
Journal article: NUCLEAR INSTRUMENTS & METHODS IN PHYSICS RESEARCH SECTION B-BEAM INTERACTIONS WITH MATERIALS AND ATOMS. 1994;88(1-2):138-142
ION DESORPTION FROM ORGANIC AND INORGANIC TARGETS INDUCED BY 100 KEV GOLD CLUSTER IONS
DEMIREV PA; ERIKSSON J; ZUBAREV RA; PAPALEO R; BRINKMALM G; HAKANSSON P; SUNDQVIST BUR
Journal article: NUCLEAR INSTRUMENTS & METHODS IN PHYSICS RESEARCH SECTION B-BEAM INTERACTIONS WITH MATERIALS AND ATOMS. 1994;88(1-2):143-148
MULTIPLICITIES OF SECONDARY IONS EMITTED IN MACROMOLECULAR ION IMPACT EVENTS
ZUBAREV RA; BITENSKY IS; DEMIREV PA; SUNDQVIST BUR
Journal article: BIOORGANICHESKAYA KHIMIYA. 1994;20(7):782-789
CF-252 PLASMA DESORPTION MASS-SPECTRA OF BACTERIAL OLIGOSACCHARIDES
ELKIN YN; KOMANDROVA NA; TOMSHICH SV; BONDARENKO PV; ZUBAREV RA; KNYSH AN
Journal article: CARBON. 1994;32(5):809-814
FORMATION AND SPUTTERING OF FULLERENES BY MEV ATOMIC IONS
DEMIREV P; BRINKMALM G; ERIKSSON J; HAKANSSON P; PAPALEO R; ZUBAREV R; SUNDQVIST BUR
Journal article: ZHONGGUO YAO LI XUE BAO = ACTA PHARMACOLOGICA SINICA. 1993;14(2):97-100
COMBINATION OF HPLC AND 252-CF PLASMA DESORPTION MASS-SPECTROMETRY FOR IDENTIFYING COMPOSITION OF GINSENG TINCTURES
ELKIN YN; MAKHANKOV VV; UVAROVA NL; BONDARENKO PV; ZUBAREV RA; KNYSH AN
Journal article: BIOLOGICAL MASS SPECTROMETRY. 1992;21(7):323-330
DESIGN AND OPTIMIZATION OF A MICROPUMP-BASED ELECTROSPRAY DEVICE FOR PREPARATION OF NITROCELLULOSE SUBSTRATES FOR PLASMA DESORPTION TIME-OF-FLIGHT MASS-SPECTROMETRY
BONDARENKO PV; ZUBAREV RA; KNYSH AN; ROZYNOV BV
Journal article: UKRAINSKII BIOKHIMICHESKII ZHURNAL. 1992;64(1):41-49
[Study of the interaction of triethylenethiophosphamide with nucleotides by mass spectrometry with ionization by fission fragments of californium-252].
Sukhodub LF; Chivanov VD; Grebenik LI; Bondarenko PV; Zubarev RA; Knysh AN
Journal article: ORGANIC MASS SPECTROMETRY. 1991;26(9):765-769
ON-TARGET DEUTERATION TECHNIQUE IN TIME-OF-FLIGHT CF-252 PLASMA DESORPTION MASS-SPECTROMETRY
BONDARENKO PV; ZUBAREV RA; KNYSH AN; ROZYNOV BV
Journal article: BIOORGANICHESKAYA KHIMIYA. 1991;17(7):999-1001
OBSERVATION OF THIOTEPA DEOXYGUANOSINE-5'-PHOSPHATE MODIFICATION PRODUCTS BY PDMS
SUKHODUB LF; CHIVANOV VD; GREBENIK LI; BONDARENKO PV; ZUBAREV RA; KNYSH AN
Journal article: INTERNATIONAL JOURNAL OF MASS SPECTROMETRY AND ION PROCESSES. 1991;107(1):17-27
SOME 2ND-ORDER ERRORS IN AVERAGE MASS MEASUREMENT OF COMPLEX BIOLOGICAL MOLECULES IN TIME-OF-FLIGHT PARTICLE DESORPTION MASS-SPECTROMETRY
ZUBAREV RA
Journal article: RAPID COMMUNICATIONS IN MASS SPECTROMETRY. 1991;5(6):278-282
COMPARISON OF MASS-SPECTRA OBTAINED USING CF-252 PLASMA-DESORPTION AND ELECTRON-AVALANCHE-DESORPTION MASS-SPECTROMETRY
ZUBAREV RA; BONDARENKO PV; KNYSH AN; ROZYNOV BV
Journal article: RAPID COMMUNICATIONS IN MASS SPECTROMETRY. 1991;5(6):276-277
AN A-PRIORI RELATIONSHIP BETWEEN THE AVERAGE AND MONOISOTOPIC MASSES OF PEPTIDES AND OLIGONUCLEOTIDES
ZUBAREV RA; BONDARENKO PV
Journal article: VYSOKOMOLEKULARNYE SOEDINENIYA. SERIYA A. 1991;33(9):2020-2026
THIN-LAYER CHROMATOGRAPHY AND MASS-SPECTROMETRY WITH IONIZATION BY THE DECAY PRODUCTS OF CF-252 TO STUDY MMD OF OLIGOSTYRENES
BELENKII BG; BONDARENKO PV; GANKINA ES; ZUBAREV RA; KNYSH AN; KOLTSOVA OA
Journal article: RAPID COMMUNICATIONS IN MASS SPECTROMETRY. 1991;5(1):32-34
ELECTRON AVALANCHE DESORPTION - A NEW SOFT-IONIZATION TECHNIQUE FOR NONVOLATILE AND OR THERMALLY LABILE MOLECULES
ZUBAREV RA; BONDARENKO PV; KNYSH AN; ROZYNOV BV
Journal article: POLYMER SCIENCE USSR. 1991;33(9):1895-1902
Thin-layer chromatography-mass spectrometry with ionization by californium-252 fission products used for studying molecular mass distribution of oligomeric polystyrenes
Belen'kii BG; Bondarenko PV; Gankina ES; Zubarev RA; Knysh AN; Kol'tsova OA
Journal article: IZVESTIYA VYSSHIKH UCHEBNYKH ZAVEDENIJ. RADIOELEKTRONIKA. 1988;31(9):55-57
PROGRAMS OF THE GRAPHICAL INPUT OF ELECTRONIC NETWORKS FOR MATRIX LSI COMPUTER-AIDED-DESIGN
ZUBAREV RA; LEBEDEV AA; SAMOTAYEV NA; SOLDATOV VP
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All other publications

Conference publication: BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE. 2024;1870(8):167373
Oxygen-sensitive Regulation of Mitochondrial Mass and its implication in the von Hippel-Lindau Syndrome
Li S; Li W; Yuan J; Bullova P; Wu J; Zhang X; Liu Y; Plescher M; Rodriguez J; Bedoya-Reina OC; Jannig PR; Valente-Silva P; Yu M; Henriksson MA; Zubarev RA; Smed-Sorensen A; Suzuki CK; Ruas JL; Holmberg J; Larsson C; Juhlin CC; von Kriegsheim A; Cao Y; Schlisio S
Preprint: BIORXIV. 2024
One-Pot Time-Induced Proteome Integral Solubility Alteration (OPTI-PISA) assay for automated and sensitive drug target identification
Meng Z; Saei AA; Lyu H; Gaetani M; Zubarev R
Preprint: BIORXIV. 2024
ThermoTargetMiner as a proteome integral solubility alteration target database for prospective drugs against lung cancer
Lyu H; Gharibi H; Sokolova B; Voiland A; Nilsson B; Meng Z; Gaetani M; Saei AA; Zubarev R
Preprint: BIORXIV. 2024
Silk-Ovarioids: Establishment and characterization of human ovarian primary cells 3D-model system
Di Nisio V; Li T; Xiao Z; Papaikonomou K; Damdimopoulos A; Végvári Á; Lebre F; Alfaro-Moreno E; Pedersen M; Svingen T; Zubarev R; Acharya G; Damdimopoulou P; Salumets A
Preprint: BIORXIV. 2024
Gel-Assisted Proteome Position Integral Shift (GAPPIS) Assay Returns Molecular Weight to Shotgun Proteomics and Identifies Novel Caspase 3 Substrates
Meng Z; Saei AA; Zhang X; Lyu H; Gharibi H; Lundström S; Végvári Á; Gaetani M; Zubarev R
Preprint: BIORXIV. 2024
Do light eaters live shorter lives? The case of ultralightCaenorhabditis elegans
Zhang X; Gharibi H; Beusch C; Meng Z; Saei A; Gaetani M; Zubarev R
Book chapter: METHODS IN MOLECULAR BIOLOGY. 2024;p. 133-143
EquiCP: Targeted Single-Cell Proteomics by Mass Spectrometry with Isobaric Labeled Multiplexing.
Naval P; Pañeda LP; Athanasopoulou M; Teppo JS; Zubarev RA; Végvári Á
Conference publication: EUROPEAN JOURNAL OF IMMUNOLOGY. 2024;54:1675
Advancing rheumatoid arthritis therapy by tolerogenic peptide-based vaccines
Castillo LR; Pandey RK; Zeqiraj K; Beusch C; Coelho A; Svensson C; Xu B; Urbonaviciute V; Zubarev R; Holmdahl R
Book chapter: METHODS IN MOLECULAR BIOLOGY. 2024;p. 33-43
A Sample Preparation Procedure for Isobaric Labeling-Based Single-Cell Proteomics.
Marín-Vicente C; Calvo E; Rodríguez JM; Villa Del Campo C; Sierra R; Végvári Á; Zubarev RA; Torres M; Vázquez J
Book chapter: METHODS IN MOLECULAR BIOLOGY. 2024;p. c1
Correction to: A Sample Preparation Procedure for Isobaric Labeling-Based Single-Cell Proteomics.
Marín-Vicente C; Calvo E; Rodríguez JM; Villa Del Campo C; Sierra R; Végvári Á; Zubarev RA; Torres M; Vázquez J
Corrigendum: JOURNAL OF EXPERIMENTAL MEDICINE. 2023;220(11):e2023010109212023c
Antigen-presenting autoreactive B cells activate regulatory T cells and suppress autoimmune arthritis in mice ( vol 220 , e20230101 , 2023)
Aoun M; Coelho A; Kramer A; Saxena A; Sabatier P; Beusch CM; Lonnblom E; Geng M; Do N-N; Xu Z; Zhang J; He Y; Castillo LR; Abolhassani H; Xu B; Viljanen J; Rorbach J; Lahore GF; Gjertsson I; Kastbom A; Sjowall C; Kihlberg J; Zubarev RA; Burkhardt H; Holmdahl R
Preprint: BIORXIV. 2023
Chemical proteomics reveals that the anticancer drug everolimus affects ubiquitin-proteasome system
Lobas A; Saei AA; Lyu H; Zubarev R; Gorshkov M
Preprint: BIORXIV. 2023
Multifaceted proteome analysis at solubility, redox, and expression dimensions for target identification
Saei AA; Lundin A; Lyu H; Gharibi H; Luo H; Teppo J; Zhang X; Gaetani M; Végvári Á; Holmdahl R; Gygi S; Zubarev R
Preprint: BIORXIV. 2023
SpotLight proteomics identifies variable sequences of blood antibodies specific against deamidated human serum albumin
Wang J; Lundström S; Lu W; Huang Y; Rodin S; Zubarev R
Conference publication: 2023;:163-166
On Chirality, Symmetry, Entropy and Isotopes
Zubarev RA
Preprint: BIORXIV. 2023
DOPA residues endow collagen with radical scavenging capacity
Kurth M; Barayeu U; Gharibi H; Kuzhelev A; Riedmiller K; Zilke J; Noack K; Denysenkov V; Kappl R; Prisner T; Zubarev R; Dick T; Gräter F
Preprint: BIORXIV. 2023
Massive solubility changes of neuronal proteins upon simulated traumatic brain injury reveal the role of shockwave in irreversible damage
Saei AA; Gharibi H; Lyu H; Nilsson B; Jafari M; von Holst H; Zubarev R
Corrigendum: FRONTIERS IN IMMUNOLOGY. 2023;14:1331366
Brain endothelial cells exposure to malaria parasites links type I interferon signalling to antigen presentation, immunoproteasome activation, endothelium disruption, and cellular metabolism (vol 14, 1149107, 2023)
Shafi AM; Vegvari A; Howland SW; Zubarev RA; Renia L; Penha-Goncalves C
Editorial comment: AGING-US. 2022;14(22):8882-8883
Isoaspartate and neurodegeneration
Wang J; Mukherjee S; Zubarev RA
Preprint: BIORXIV. 2022
Brain endothelial cells exposure to malaria parasites links Type I interferon signalling to antigen presentation, immunoproteasome activation, endothelium disruption and cell metabolic adaptation
Shafi AM; Végvári Á; Zubarev R; Penha-Gonçalves C
Corrigendum: NATURE METABOLISM. 2022;4(10):1421
Impaired oxygen-sensitive regulation of mitochondrial biogenesis within the von Hippel-Lindau syndrome (June, 10.1038/s42255-022-00593-x, 2022)
Li S; Li W; Yuan J; Bullova P; Wu J; Zhang X; Liu Y; Plescher M; Rodriguez J; Bedoya-Reina OC; Jannig PR; Valente-Silva P; Yu M; Henriksson MA; Zubarev RA; Smed-Sorensen A; Suzuki CK; Ruas JL; Holmberg J; Larsson C; Christofer Juhlin C; von Kriegsheim A; Cao Y; Schlisio S
Preprint: RESEARCH SQUARE. 2022
Deamidation-related blood biomarkers show promise for early diagnostics of neurodegeneration
WANG J; Zhang Y-R; Shen X-N; Han J; Cui M; Tan L; Dong Q; Zubarev R; Yu J-T
Preprint: BIORXIV. 2022
Mapping the GALNT1 substrate landscape with versatile proteomics tools
Saei AA; Lundström S; Lyu H; Gharibi H; Lu W; Fang P; Zhang X; Meng Z; Wang J; Gaetani M; Végvári Á; Gygi S; Zubarev R
Preprint: BIORXIV. 2022
System-wide profiling by proteome integral solubility alteration assay of drug residence times for target characterization
Sabatier P; Beusch C; Meng Z; Zubarev R
Preprint: CHEMRXIV. 2022
Ultrafast and Selective Labeling of Endogenous Proteins Using Affinity-based Benzotriazole Chemistry
Xin X; Zhang Y; Gaetani M; Lundström S; Zubarev R; Zhou Y; Corkery D; Wu Y
Preprint: BIORXIV. 2022
Testing the link between isoaspartate and Alzheimer’s disease etiology
Wang J; Guo C; Meng Z; Zwan M; Chen X; Seelow S; Lundström S; Rodin S; Teunissen C; Zubarev R
Preprint: RESEARCH SQUARE. 2022
Biomarkers of nanomaterials hazard from multi-layer data
Fortino V; Kinaret P; Fratello M; Serra A; Saarimäki L; Gallud A; Gupta G; Vales G; Correia M; Rasool O; Ytterberg J; Monopoli M; Skoog T; Ritchie P; Moya S; Vázquez-Campos S; Handy R; Grafström R; Tran L; Zubarev R; Lahesmaa R; Dawson K; Löschner K; Larsen E; Krombach F; Norppa H; Kere J; Savolainen K; Alenius H; Fadeel B; Greco D
Preprint: RESEARCH SQUARE. 2021
Ultralight ultrafast enzymes
Zhang X; Meng Z; Beusch C; Gharibi H; Cheng Q; Stefano L; Wang J; Saei A; Vegvari A; Gaetani M; Zubarev R
Preprint: BIORXIV. 2021
Redox regulation of PTPN22 affects the severity of T cell dependent autoimmune inflammation
James J; Chen Y; Hernandez C; Forster F; Dagnell M; Cheng Q; Saei A; Gharibi H; Lahore GF; Åstrand A; Malhotra R; Malissen B; Zubarev R; Arnér ESJ; Holmdahl R
Preprint: BIORXIV. 2021
Abnormal (hydroxy)prolines deuterium content redefines hydrogen chemical mass
Gharibi H; Chernobrovkin A; Eriksson G; Saei AA; Timmons Z; Kitchener A; Kalthoff D; Lidén K; Makarov A; Zubarev R
Preprint: CHEMRXIV. 2021
Ultrafast and Selective Labeling of Endogenous Proteins Using Affinity-based Benzotriazole Chemistry
Xin X; Zhang Y; Gaetani M; Lundström S; Zubarev R; Zhou Y; Corkery D; Wu Y
Preprint: CHEMRXIV. 2021
Ultrafast and Selective Labeling of Endogenous Proteins Using Affinity-based Benzotriazole Chemistry
Xin X; Zhang Y; Gaetani M; Lundström S; Zubarev R; Zhou Y; Corkery D; Wu Y
Preprint: CHEMRXIV. 2021
A non-radioactive mass spectrometry based differential radial capillary action of ligand assay (DRaCALA) to assess ligand binding to proteins
Cimdins-Ahne A; Chernobrovkin A; Zubarev R; Römling U
Preprint: CHEMRXIV. 2021
A non-radioactive mass spectrometry based differential radial capillary action of ligand assay (DRaCALA) to assess ligand binding to proteins
Cimdins-Ahne A; Chernobrovkin A; Zubarev R; Römling U
Preprint: CHEMRXIV. 2021
Adding colour to mass spectra: Charge Determination Analysis (CHARDA) assigns charge state to every ion peak
Lyutvinskiy Y; Nagornov KO; Kozhinov AN; Gasilova N; Menin L; Meng Z; Zhang X; Saei AA; Tsybin YO; Makarov A; Zubarev R
Preprint: CHEMRXIV. 2021
Adding colour to mass spectra: Charge Determination Analysis (CHARDA) assigns charge state to every ion peak
Lyutvinskiy Y; Nagornov KO; Kozhinov AN; Gasilova N; Menin L; Meng Z; Zhang X; Saei AA; Tsybin YO; Makarov A; Zubarev R
Preprint: BIORXIV. 2021
Single Cell Chemical Proteomics (SCCP) Interrogates the Timing and Heterogeneity of Cancer Cell Commitment to Death
Végvári Á; Rodriguez J; Zubarev R
Preprint: RESEARCH SQUARE. 2021
Polymorphic estrogen receptor binding site causes CD2-dependent sex bias in the susceptibility to autoimmune diseases
Lahore GF; Förster M; Johannesson M; Sabatier P; Lönnblom E; Aoun M; He Y; Nandakumar K; Zubarev R; Holmdahl R
Preprint: RESEARCH SQUARE. 2021
SIESTA as a universal unbiased proteomics approach for identification and prioritization of enzyme substrates
Saei AA; Beusch C; Sabatier P; Wells JA; Gharibi H; Meng Z; Chernobrovkin A; Rodin S; Näreoja K; Thorsell A-G; Karlberg T; Cheng Q; Lundström S; Gaetani M; Végvári Á; Arnér ESJ; Schüler H; Zubarev R
Preprint: BIORXIV. 2021
A “spindle and thread”-mechanism unblocks translation of N-terminally disordered proteins
Kaldmäe M; Vosselman T; Zhong X; Lama D; Chen G; Saluri M; Kronqvist N; Siau JW; Ng AS; Ghadessy F; Sabatier P; Vojtesek B; Sarr M; Sahin C; Österlund N; Ilag L; Väänänen V; Sedimbi S; Zubarev R; Nilsson L; Koeck P; Rising A; Fritz N; Johansson J; Lane D; Landreh M
Preprint: SSRN ELECTRONIC JOURNAL. 2021
A 'Spindle and Thread'-Mechanism Unblocks p53 Translation by Modulating N-Terminal Disorder
Kaldmäe M; Vosselman T; Zhong X; Lama D; Chen G; Saluri M; Kronqvist N; Sau JW; Ng AS; Ghadessy F; Sabatier P; Vojtesek B; Sarr M; Sahin C; Österlund N; Ilag L; Väänänen V; Sedimbi S; Arsenain-Henriksson M; Zubarev R; Nilsson L; Koeck P; Rising A; Abelein A; Fritz N; johansson J; Lane DP; Landreh M
Conference publication: HUMAN REPRODUCTION. 2021;36:69
Green Tea catechins EGCG and pro-drug of EGCG (Pro-EGCG) inhibit endometriosis through targeting molecules regulating macrophages and B cells
Hung SW; Gaetani M; Tan ZYR; Zhang RZ; Zubarev RA; Wang CC
Preprint: SSRN ELECTRONIC JOURNAL. 2021
Single Cell Chemical Proteomics (SCCP) Interrogates the Timing and Heterogeneity of Cancer Cell Commitment to Death
Végvári Á; Rodriguez JE; Zubarev R
Corrigendum: LEUKEMIA. 2020;34(12):3439
S100A6 is a critical regulator of hematopoietic stem cells (vol 53, pg 731, 2020)
Grahn THM; Niroula A; Vegvari A; Oburoglu L; Pertesi M; Warsi S; Safi F; Miharada N; Capellera-Garcia S; Siva K; Liu Y; Rorby E; Nilsson B; Zubarev RA; Karlsson S
Conference publication: ANNALS OF THE RHEUMATIC DISEASES. 2020;79:571
IGM ANTIBODIES AGAINST MALONDIALDEHYDE AND PHOSPHORYLCHOLINE IN DIFFERENT SYSTEMIC RHEUMATIC DISEASES
Thiagarajan D; Lundstrom S; Zubarev R; Sun J; Alarcon-Riquelme M; Frostegard J
Preprint: CHEMRXIV. 2020
A Cyclic Di-GMP Network Is Present in Gram-Positive Streptococcus and Gram-Negative Proteus Species
Liu Y; Lee C; Li F; Trček J; Bähre H; Guo R-T; Chen C-C; Chernobrovkin A; Zubarev R; Romling U
Preprint: CHEMRXIV. 2020
A Cyclic Di-GMP Network Is Present in Gram-Positive Streptococcus and Gram-Negative Proteus Species
Liu Y; Lee C; Li F; Trček J; Bähre H; Guo R-T; Chen C-C; Chernobrovkin A; Zubarev R; Romling U
Conference publication: EXPERIMENTAL HEMATOLOGY. 2020;88:S50
UM171 PROMOTES EX VIVO EXPANSION OF HUMAN HSCS BY TARGETING THE EPIGENETIC MODULATOR COREST FOR DEGRADATION
Subramaniam A; Zemaitis K; Talkhoncheh MS; Backstrom A; Yudovich D; Gaetani M; Zubarev R; Larsson J
Book chapter: MASS SPECTROMETRY‐BASED CHEMICAL PROTEOMICS. 2019;p. 257-266
Functional Identification of Target by Expression Proteomics (FITExP)
Gaetani M; Zubarev RA
Conference publication: ANNALS OF THE RHEUMATIC DISEASES. 2019;78:386-387
IGG1 ANTIBODIES AGAINST PHOSPHORYLCHOLINE ARE ASSOCIATED WITH PROTECTION IN SLE AND ATHEROSCLEROSIS: POTENTIAL UNDERLYING MECHANISMS
Thiagarajan D; Oparina N; Steen J; Rahman M; Vikstrom M; Zubarev R; Lundstrom S; Frostegard J
Conference publication: ANNALS OF THE RHEUMATIC DISEASES. 2019;78:386
IGM ANTIBODIES AGAINST MALONDIALDEHYDE AND PHOSPHORYLCHOLINE IN DIFFERENT SYSTEMIC RHEUMATIC DISEASES
Thiagarajan D; Lundstrom S; Zubarev R; Sun J; Alarcon-Riquelme M; Frostegard J
Conference publication: EUROPEAN JOURNAL OF IMMUNOLOGY. 2019;49:1692
Haptoglobin enhances the in vitro migration capacity and the expression of immune related proteins in therapeutically used human dendritic cells
Gonzalez F; Vivanco S; Lavin F; Fuentes C; Reyes M; Chernobrovkin A; Zubarev R; Salazar-Onfray F
Conference publication: INTERNATIONAL JOURNAL OF LABORATORY HEMATOLOGY. 2019;41:205
DIFFERENTIAL PHARMACO-PROTEOMIC ANALYSIS OF HYDROXYUREA RESPONSE IN BETA-THALASSEMIA
Zohiab M; Ansari S; Shamsi T; Zubarev R; Zarina S
Preprint: BIORXIV. 2018
Proteome Integral Stability Alteration assay dramatically increases throughput and sensitivity in profiling factor-induced proteome changes
Gaetani M; Sabatier P; Saei AA; Beusch C; Yang Z; Lundstrom S; Zubarev R
Preprint: BIORXIV. 2018
System-wide identification and prioritization of enzyme substrates by thermal analysis (SIESTA)
Saei AA; Beusch C; Sabatier P; Wells JA; Chernobrovkin A; Rodin S; Näreoja K; Thorsell A-G; Karlberg T; Cheng Q; Lundström S; Gaetani M; Végvári Á; Arnér ESJ; Schüler H; Zubarev R
Preprint: BIORXIV. 2018
ProTargetMiner: A proteome signature library of anticancer molecules for functional discovery
Saei AA; Chernobrovkin A; Sabatier P; Zhang B; Beusch C; Tokat ÜG; Gaetani M; Végvári Á; Zubarev R
Preprint: ARXIV. 2018
Variable domain N-linked glycosylation and negative surface charge are key features of monoclonal ACPA: implications for B-cell selection
Lloyd KA; Steen J; Amara K; Titcombe PJ; Israelsson L; Lundstrom SL; Zhou D; Zubarev RA; Reed E; Piccoli L; Gabay C; Lanzavecchia A; Baeten D; Lundberg K; Mueller DL; Klareskog L; Malmstrom V; Gronwall C
Conference publication: FEBS OPEN BIO. 2018;8:27
Chemical proteomics at a single cell level
Zubarev R
Conference publication: ARTHRITIS & RHEUMATOLOGY. 2018;70
Anti-Jo1 Positive Myositis Patients Display a Characteristic IgG Fc-Glycan Profile Which Is Further Enhanced in Anti-Jo1 Autoantibodies
Fernandes-Cerqueira C; Renard N; Notarnicola A; Wigren E; Graslund S; Zubarev R; Lundberg IE; Lundstrom SL
Conference publication: SCANDINAVIAN JOURNAL OF RHEUMATOLOGY. 2018;47:10
Anti-Jo1-positive myositis patients display a specific immunoglobulin G Fc-glycan profile which is further enhanced in anti-Jo1 autoantibodies
Cerqueira CF; Renard N; Notarnicola A; Zubarev RA; Lundberg IE; Lundstrom S
Preprint: ARXIV. 2017
Autoreactivity to malondialdehyde-modifications in rheumatoid arthritis is linked to disease activity and synovial pathogenesis
Gronwall C; Amara K; Hardt U; Krishnamurthy A; Steen J; Engstrom M; Sun M; Ytterberg AJ; Zubarev RA; Scheel-Toellner D; Greenberg JD; Klareskog L; Catrina AI; Malmstrom V; Silverman GJ
Book chapter: APPLIED BIOPHYSICS FOR DRUG DISCOVERY. 2017;p. 61-71
Hydrogen–Deuterium Exchange Mass Spectrometry in Drug Discovery ‐ Theory, Practice and Future
Lavold T; Zubarev R; Astorga‐Wells J
Conference publication: ANNALS OF THE RHEUMATIC DISEASES. 2017;76:1096
IGM ANTIBODIES AGAINST PHOSPHORYLCHOLINE PROMOTE POLARIZATION OF T REGULATORY CELLS FROM PATIENTS WITH ATHEROSCLEROTIC PLAQUES, SYSTEMIC LUPUS ERYTHEMATOSUS AND HEALTHY DONORS: A NOVEL IMMUNOLOGICAL CONCEPT
Sun J; Lundstrom S; Zhang B; Zubarev R; Steuer J; Gillgren P; Rahman M; Ajeganova S; Liu A; Frostegard J
Preprint: BIORXIV. 2017
Proteogenomics of adenosine-to-inosine RNA editing in the fruit fly
Kuznetsova K; Kliuchnikova A; Ilina I; Chernobrovkin A; Novikova S; Farafonova T; Karpov D; Ivanov M; Goncharov A; Voronko O; Nasaev S; Ilgisonis E; Zgoda V; Zubarev R; Gorshkov M; Moshkovskii S
Corrigendum: FRONTIERS IN IMMUNOLOGY. 2017;8:1236
Functional and Structural Characterization of a Novel HLA-DRB1*04:01-Restricted α-Enolase T Cell Epitope in Rheumatoid Arthritis (vol 7, 494, 2016)
Gerstner C; Dubnovitsky A; Sandin C; Kozhukh G; Uchtenhagen H; James EA; Ronnelid J; Ytterberg AJ; Pieper J; Reed E; Tandre K; Rieck M; Zubarev RA; Ronnblom L; Sandalova T; Buckner JH; Achour A; Malmstrom V
Conference publication: SCANDINAVIAN JOURNAL OF UROLOGY. 2017;51:36-37
Individual immunoproteomics identifies il-16 processing in tregs as a factor in bladder cancer tumour immunity
Mints M; Krantz D; Johansson M; Hansson J; Vasko J; Winerdal M; Zirakzadeh A; Riklund K; Zubarev R; Rutishauser D; Sherif A; Winqvist O
Conference publication: THROMBOSIS RESEARCH. 2017;151:S131
The microparticle proteome in IVF - changes during the oestrogen surge of controlled ovarian hyperstimulation
Olausson N; Henriksson P; Zubarev R; Hovatta O; Westerlund E; Wallen H; Mobarrez F
Conference publication: SCANDINAVIAN JOURNAL OF IMMUNOLOGY. 2017;86(4):278-279
Altered Fc galactosylation status in IgG4 is a potential serum biomarker for chronic sarcoidosis
Heyder T; Wiklundh E; Eklund A; Grunewald J; Zubarev RA; Lundstrom SL
Conference publication: ANNALS OF THE RHEUMATIC DISEASES. 2016;75:A77-A78
IGG FC GALACTOSYLATION CHANGES AND PREDICTS RESPONSE TO METHOTREXATE IN EARLY RHEUMATOID ARTHRITIS
Hensvold AH; Lundstrom SL; Rutishauser D; Klareskog L; Zubarev RA; Ytterberg AJ; Catrina AI
Conference publication: EUROPEAN HEART JOURNAL. 2016;37:949
The micro particle proteome in women during in vitro fertilization potential clues to the pathophysiology of the increased incidence of pulmonary embolism
Henriksson P; Zubarev R; Olausson N; Hovatta O; Westerlund E; Wallen H; Mobarrez F
Corrigendum: INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY. 2015;64:128
Effect of host plant and immune challenge on the levels of chemosensory and odorant-binding proteins in caterpillar salivary glands (vol 61, pg 34, 2015)
Celorio-Mancera MDLP; Ytterberg AJ; Rutishauser D; Janz N; Zubarev RA
Conference publication: ACS NATIONAL MEETING BOOK OF ABSTRACTS. 2015;250
Monoisotopic proteomics
Zubarev R
Conference publication: ARTHRITIS & RHEUMATOLOGY. 2015;67
Identification of Four-and-a-Half-LIM Domain 1 (FHL1) As a New Autoantibody Target in Idiopathic Inflammatory Myopathies
Albrecht I; Wick C; Hallgren A; Tjarnlund A; Nagaraju K; Andrade F; Thompson K; Coley W; Phadke A; Diaz-Gallo L-M; Bottai M; Nennesmo I; Chemin K; Herrath J; Johansson K; Wikberg A; Ytterberg J; Zubarev R; Danielsson O; Krystufkova O; Vencovsky J; Landegren N; Wahren-Herlenius M; Padyukov L; Kampe O; Lundberg IE
Preprint: ARXIV. 2014
Isotopic Resonance Hypothesis: Experimental Verification by Escherichia coli Growth Measurements
Xie X; Zubarev RA
Preprint: ARXIV. 2014
Expression proteomics reveals protein targets and highlights mechanisms of action of small molecule drugs
Chernobrovkin A; Vicente CM; Visa N; Zubarev RA
Preprint: ARXIV. 2014
Effects of low-level deuterium enrichment on bacterial growth
Xie X; Zubarev RA
Conference publication: SCANDINAVIAN JOURNAL OF IMMUNOLOGY. 2014;79(6):470
Method Development for the Identification of HLA-DR-Bound Peptides
Heyder T; Kohler M; Wheelock A; Wahlstrom J; Eklund A; Zubarev R; Grunewald J; Ytterberg J
Meeting abstract: ANNALS OF THE RHEUMATIC DISEASES. 2012;71:343-344
LUNG CHANGES ARE PRESENT IN ACPA POSITIVE RA ALREADY AT DISEASE ONSET
Reynisdotirr G; Karimi R; Joshua V; Hensvold AH; Ossipova E; Ytterberg J; Nyren S; Harju A; Grunewald J; Lundberg K; Eklund A; Jakobson P-J; Zubarev R; Klareskog L; Skold M; Catrina AI
Meeting abstract: ANNALS OF THE RHEUMATIC DISEASES. 2012;71:A19
IDENTIFICATION OF SHARED CITRULLINATED IMMUNOLOGICAL TARGETS IN THE LUNGS AND JOINTS OF PATIENTS WITH RHEUMATOID ARTHRITIS
Ytterberg AJ; Reynisdottir G; Ossipova E; Rutishauser D; Hensvold A; Eklund A; Skold M; Grunewald J; Lundberg K; Malmstrom V; Jakobsson PJ; Zubarev R; Klareskog L; Catrina AI
Conference publication: ARTHRITIS & RHEUMATOLOGY. 2012;64(10):S723
Early Signs of Subclinical Inflammation and Local Antibody Production in Early Rheumatoid Lungs
Reynisdottir G; Karimi R; Ytterberg J; Joshua V; Olsen H; Hensvold AH; Harju A; Grunewald J; Nyren S; Eklund A; Klareskog L; Zubarev R; Skold M; Catrina AI
Editorial comment: JOURNAL OF PROTEOMICS. 2011;75(1):4-17
Facing challenges in Proteomics today and in the coming decade: Report of Roundtable Discussions at the 4th EuPA Scientific Meeting, Portugal, Estoril 2010
Cox J; Heeren RMA; James P; Jorrin-Novo JV; Kolker E; Levander F; Morrice N; Picotti P; Righetti PG; Sanchez J-C; Turck CW; Zubarev R; Alexandre BM; Corrales FJ; Marko-Varga G; O'Donovan S; O'Neil S; Prechl J; Simoes T; Weckwerth W; Penque D
Review: JOURNAL OF PROTEOMICS. 2011;74(8):1475-1482
New proteomic developments to analyze protein isomerization and their biological significance in plants
Grappin P; Collet B; Yang H; Jallet D; Oge L; Zubarev R
Conference publication: ARTHRITIS & RHEUMATOLOGY. 2011;63(10):S849
Identification of Shared Citrullinated Potentially Immunological Targets in the Lungs and Joints of Patients with Rheumatoid Arthritis.
Ytterberg J; Reynisdottir G; Ossipova E; Hensvold AH; Eklund A; Skold M; Grunewald J; Lundberg K; Malmstrom V; Jakobsson PJ; Zubarev R; Klareskog L; Catrina AI
Corrigendum: ANALYTICAL AND BIOANALYTICAL CHEMISTRY. 2010;398(7-8):3225-3226
Porcine P2 myelin protein primary structure and bound fatty acids determined by mass spectrometry (vol 397, pg 1903, 2010)
Maddalo G; Shariatgorji M; Adams CM; Fung E; Nilsson U; Zubarev RA; Sedzik J; Ilag LL
Review: ELECTROPHORESIS. 2010;31(11):1764-1772
Mass spectrometric analysis of asparagine deamidation and aspartate isomerization in polypeptides
Yang H; Zubarev RA
Conference publication: JOURNAL OF IMMUNOLOGY. 2010;184:100.31
Inflammation-Induced Myeloid-Derived Suppressor Cells have enhanced resistance to apoptosis.
Chornoguz O; Grmail L; Sinha P; Artemenko K; Zubarev R; Ostrand-Rosenberg S
Conference publication: JOURNAL OF IMMUNOLOGY. 2010;184:100.18
Myeloid-derived suppressor cells express the death receptor Fas and apoptose in response to T cell-expressed FasL
Sinha P; Chornoguz O; Clements V; Artemenko K; Zubarev R; Ostrand-Rosenberg S
Meeting abstract: ANNALS OF THE RHEUMATIC DISEASES. 2010;69:a4-a5
IDENTIFICATION OF SPECIFIC CITRULLINATION SITES ON FIBRINOGEN IN RA
Ossipova E; Malmstrom V; Catrina AI; Klareskog L; Zubarev R; Jakobsson P-J
Conference publication: BLOOD. 2010;116(21):1298
High Levels of the Adhesion Molecule CD44 on Leukemic Cells Generate Acute Myeloid Leukemia Relapse After Withdrawal of the Initial Transforming Event
Quere R; Andradottir S; Brun A; Zubarev R; Karlsson G; Olsson K; Magnusson M; Cammenga J; Karlsson S
Conference publication: FEBS JOURNAL. 2010;277:132-133
The PKCα-Plectin interaction controls the cytoskeleton assembly in PC12 cells differentiated with NGF and ATP
Corbalan-Garcia S; Guerrero-Valero M; Marin-Vicente C; Gomez-Fernandez JC; Zubarev RA
Conference publication: FEBS JOURNAL. 2010;277:35
Novel 'tomography' mass spectrometry tissue imaging method
Zubarev R; Corina M
Meeting abstract: CHEMISTRY AND PHYSICS OF LIPIDS. 2009;160:S34
Alterations in glucosylceramide molecular species profile in unicellular green algae Pseudococcomyxa chodatii in response to phosphate deprivation
Kiseleva MA; Kotlova ER; Sinyutina NF; Artemenko KA; Zubarev RA
Meeting abstract: CHEMISTRY AND PHYSICS OF LIPIDS. 2009;160:S30
Sphingolipid synthesis inhibitors affect growth, morphology and metabolism of basidial fungus Flammulina velutipes
Senik SV; Kotlova ER; Kiyashko AA; Shavarda AL; Artemenko KA; Zubarev RA
Conference publication: MOLECULAR & CELLULAR PROTEOMICS. 2009;:S13
The Use of ECD for Proteomics-wide Identification and Quantification of iso-Asp Residues
Yang H; Fung YME; Zubarev AR; Zubarev RA
Conference publication: DIABETOLOGIA. 2009;52:S174
Signalling in islets isolated from individuals with type 2 diabetes mellitus
Bergsten P; Nyblom HK; Bugliani M; Fung E; Boggi U; Marchetti P; Zubarev R
Editorial comment: INTERNATIONAL JOURNAL OF MASS SPECTROMETRY. 2008;276(2-3):V-VI
Electron/ion and ion/ion interactions: Fundamentals, applications, tools, and methodologies - Foreword
Zubarev RA; McLuckey SA
Meeting abstract: EUROPEAN JOURNAL OF PHARMACEUTICAL SCIENCES. 2008;34(1):S21-S22
Pathway search engine for proteomics - Dream, fact or fiction?
Fung EM; Savitski MM; Zubarev RA
Conference publication: DIABETOLOGIA. 2008;51:S262
Proteomic analysis identified novel signalling pathways activated in human pancreatic islets of type 2 diabetes patients
Nyblom HK; Bugliani M; Fung YME; Zubarev RA; Marchetti P; Bergsten P
Conference publication: ANTICANCER RESEARCH. 2008;28(5C):3497
PROTEOMICS AND PATHWAY ANALYSIS IDENTIFIES JNK-SIGNALING AS CRITICAL FOR HIGH-LET RADIATION-INDUCED APOPTOSIS IN NON-SMALL LUNG CANCER CELLS
Stahl S; Fung E; Adams C; Lengqvist J; Mork B; Stenerlow B; Lewensohn R; Lehtio J; Zubarev R; Viktorsson K
Meeting abstract: CHEMISTRY AND PHYSICS OF LIPIDS. 2007;149:S82
Glycosylceramides from Flammulina velutipes:: Variety of molecular species, metabolism and involvement in fungal differentiation
Kotlova ER; Senik SV; Kocher T; Shavarda AL; Sinyutina NF; Psurtseva NV; Zubarev RA
Review: MOLECULAR & CELLULAR PROTEOMICS. 2007;6(3):377-381
On the proper use of mass accuracy in proteomics
Zubarev R; Mann M
Book chapter: PRINCIPLES OF MASS SPECTROMETRY APPLIED TO BIOMOLECULES. 2006;p. 475-517
Electron Capture Dissociation and Other Ion–Electron Fragmentation Reactions
Zubarev R
Review: EXPERT REVIEW OF PROTEOMICS. 2006;3(2):251-261
Protein primary structure using orthogonal fragmentation techniques in Fourier transform mass spectrometry
Zubarev R
Published conference paper: LECTURE NOTES IN COMPUTER SCIENCE. 2006;3909:456-457
Revealing the proteome complexity by mass spectrometry
Zubarev RA
Letter: RAPID COMMUNICATIONS IN MASS SPECTROMETRY. 2005;19(24):3755-3758
On the accuracy of polypeptide masses measured in a linear ion trap
Gorshkov MV; Zubarev RA
Conference publication: MOLECULAR & CELLULAR PROTEOMICS. 2005;4(8):S16
Toward error-free proteomics
Zubarev RA; Nielsen ML; Savitski MM; Kocher T
Review: CURRENT OPINION IN BIOTECHNOLOGY. 2004;15(1):12-16
Electron-capture dissociation tandem mass spectrometry
Zubarev RA
Letter: EUROPEAN JOURNAL OF MASS SPECTROMETRY. 2003;9(3):221-222
Letter:: The diagnostic value of amino acid side-chain losses in electron capture dissociation of polypeptides.: Comment on:: "Can the (M^•-X) region in electron capture dissociation provide reliable information on amino acid composition of polypeptides?", Eur. J-Mass Spectrom.: 8, 461-469 (2002)
Cooper HJ; Håkansson K; Marshall AG; Hudgins RR; Haselmann KF; Kjeldsen F; Budnik BA; Polfer NC; Zubarev RA
Review: MASS SPECTROMETRY REVIEWS. 2003;22(1):57-77
Reactions of polypeptide ions with electrons in the gas phase
Zubarev RA
Published conference paper: EUROPEAN JOURNAL OF MASS SPECTROMETRY. 2000;6(3):235-240
Tandem ionization mass spectrometry of biomolecules
Zubarev RA; Nielsen ML; Budnik BA
Book chapter: MASS SPECTROMETRY IN BIOLOGY & MEDICINE. 2000;p. 111-120
Electron Capture Dissociation Produces Many More Protein Backbone Cleavages Than Collisional and IR Excitation
Zubarev RA; Fridriksson EK; Horn DM; Kelleher NL; Kruger NA; Lewis MA; Carpenter BK; Mclafferty FW
Review: CURRENT OPINION IN CHEMICAL BIOLOGY. 1998;2(5):571-578
Two-dimensional mass spectrometry of biomolecules at the subfemtomole level
McLafferty FW; Kelleher NL; Begley TP; Fridriksson EK; Zubarev RA; Horn DM
Letter: ANALYTICAL CHEMISTRY. 1995;67(20):3793-3798
APPROACHES AND LIMITS FOR ACCURATE MASS CHARACTERIZATION OF LARGE BIOMOLECULES
ZUBAREV RA; DEMIREV PA; HAKANSSON P; SUNDQVIST BUR
Preprint: NATURE PRECEDINGS.
The Proteomics World is Flat: Dependence of Regulation upon Abundance
Good D; Zubarev R
Preprint: NATURE PRECEDINGS.
Early Life Relict Feature in Peptide Mass Distribution
Zubarev R; Artemenko K; Zubarev A; Mayrhofer C; Fung E
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